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Detailed information on CNT30220990


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677634Hordeum vulgareSetaria viridis18.3925.8391.42233forward
CNT30524944Hordeum vulgarePhaseolus vulgaris18.2323.1986.15231forward
CNT3018229Hordeum vulgareZea mays5.631.710071reverse complement
CNT30416238Hordeum vulgarePapaver somniferum18.3930.4289.27233forward
CNT30100515Hordeum vulgareOryza rufipogon5.6828.3598.6172reverse complement
CNT30578120Hordeum vulgareOryza barthii16.8136.9890.14213forward

Expression of CNT30220990

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVNQTTFLSLLFWLIEQALRPRGMHSCMQRKRGV*

Sequence

>CNT30220990
TTCTCGCAGAGCCGAGTCGGGCTAGTAAGAAGTAGCTACTTTATGCAGCTTTGTATCTGGTCCGGGACCTCATCATAGCAAACCATCTACGCATTTTTTA
AACCAATGGTCAATCAAACAACTTTCCTCAGCCTTCTTTTCTGGTTGATTGAGCAAGCCCTGAGACCGAGAGGGATGCACTCCTGCATGCAAAGGAAGAG
AGGTGTATAGAATAGAGCCGAGAATATCACCTAGAACGTGCTTTTGGTACCATGGAACGCAGTCCCTGTGACCCTATAACCGGCGGATCGATCCTTGTAG
GCAGCCACTCCATTGGTTGAGATGCATCTACTGTCTCATCTTGGCTATCTACTAGCAAACCGCCCACAGGTTCTTGCATAGTATCACGAGTCATGTTAAC
CTCTCCCTCCTGGTGCTGAAGAATAGAAAGAAGCCAAACCCACCAGGACTTCTCCTCAAATCAGAAAGAGATCCGCCCACAGATTGGCAAAACCACACTC
CCCCGTTTCCAGCTTAGTGAGGGGATTCCTTTAATGCTTTCCCTTCAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCC
GAATCGAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGGTCCTTCTNCAAAGGAAGAGA
GGTGTATAGAATAGAGCCGAGAATATCACCTAGAACGTGCTTTTGGTACCATGGAACGCAGTCCCTGTGACCCTATAACCGGCGGATCGATCCTTGTAGG
CAGCCACTCCATTGGTTGAGATGCATCTACTGTCTCATCTTGGCTATCTACTAGCAAACCGCCCACAGGTTCTTGCATAGTATCACGAGTCATGTTAACC
TCTCCCTCCTGGTGCTGAAGAATAGAAAGAAGCCAAACCCACCAGGACTTCTGTTAAAATCAGAAAGAGATCCGCCCACAGATTGGCAAAACCACACTCC
CCCGTTTCCAGCTTAGTGAGGGGATTCCTTTAATGCTTTCCCTTCAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCG
AATCAAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGTCTGCTCTAGTCCCTTTACGAAACTTTCGTTATTGGGTCCTTCTCCTGTTGCTTGATT
CACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTG