Detailed information on CNT30220987


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 7e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182368Hordeum vulgareSecale cereale22.7623.8299.79483forward
CNT30394428Hordeum vulgareTriticum turgidum22.7666.899.59483forward
CNT30427311Hordeum vulgarePapaver somniferum22.9513.2394.66487forward
CNT30115468Hordeum vulgareOryza nivara22.7613.9999.17483forward

Expression of CNT30220987

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGLDSFTCIPASTKKAPVLTPLQKLCSLSLGS*

>peptide 2 (31 aa)
MQIFYEILSFHRCIWSETVQYSTRGMQWDGW*

>peptide 3 (45 aa)
MGVYRRSQRLARKGCYTKHYYLTTKKEKTIVVTRLTIVVRPAALA*

>peptide 4 (39 aa)
MGIKKNRKMQIFYEILSFHRCIWSETVQYSTRGMQWDGW*

>peptide 5 (56 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEPREMVAYYTAHKL

>peptide 6 (46 aa)
PLTASPNILPLPHHGGLQEIPETRSERLLYQTLLLNYKERKDYSSH*

>peptide 7 (58 aa)
HSLLPLISSLYHIMGVYRRSQRLARKGCYTKHYYLTTKKEKTIVVTRLTIVVRPAALA*

>peptide 8 (57 aa)
MKSFLSIDVSGLRRYSTLREECNGMDGRGLPAPKSDDSLVPLSIGTLWHTTATTPAL*

>peptide 9 (69 aa)
MGIIFLEKCRFSMKSFLSIDVSGLRRYSTLREECNGMDGRGLPAPKSDDSLVPLSIGTLWHTTATTPAL*

Sequence

>CNT30220987
CCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGACTCGCTCGGAAAGGCTGCTATACCAAACATTAT
TACTTAACTACAAAGAAAGAAAAGACTATAGTAGTCACTAGACTGACTATAGTAGTCCGTCCGGCTGCTCTTGCTTAAATCATTACTCTTCATTCTCCCG
TGCTCTAGCAATTGCGCTCCCTAGACCACTACCATTTAGTTAGGTAGGGACAATCAATCCATAGTTACGGGAATAACGGAATACATGGGGATAAAAAAAA
ATAGAAAAATGCAGATTTTCTATGAAATCCTTTCTTTCCATAGATGTATCTGGTCTGAGACGGTACAGTACTCTACGAGAGGAATGCAATGGGATGGATG
GTAGAGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCTATAGGGACCTTGTGGCATACAACCGCCACGACTCCTGCGTTATAGCCGCC
CCTTTCTCTCTTTCTTTTGACTGCCTCGTGGACGGACGAAAGAAGGGAAGTTACAGAAGGGGGCAGTGAAGGCTCGCCAAGTAGACAGCAAGCCCCCACC
CCGTCAGTCCTGTGTTGCCGTAGCGTGCCCTACTTCAATAAGGTATTACCTCGCCGATTTTAAAGGGGATGGGATTGGATTCATTCACTTGCATTCCTGC
TAGCNTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAGGGTCTCCCCTCATCCGGCTCTCCGCAGGGGAATCTCCACTCACTGCTTCCCCTAAT
ATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGACTCGCTCGGAAAGGCTGCTATACCAAACATTATTACTTAACTACAAAGAAAGAA
AAGACTATAGTAGTCACTAGACTGACTATAGTAGTCCGTCCGGCTGCTCTTGCTTAAATCATTACTCTTCATTCTCCTGTGCTCTAGCAATTGCGCTCCC
TAGACCACTACCATTTAGTTAGGTAGGGACAATCAATCCATAGTTACGGGAATAACGGAATACATGGGGATAATTTTTTTAGAAAAATGCAGATTTTCTA
TGAAATCCTTTCTTTCCATAGATGTATCTGGTCTGAGACGGTACAGTACTCTACGAGAGGAATGCAATGGGATGGATGGTAGAGGGCTGCCTGCGCCCAA
AAGCGATGATTCACTTGTCCCCTTGTCTATAGGGACCTTGTGGCATACAACCGCCACGACTCCTGCGTTATAGCCGCCCCTTTCTCTCTTTCTTTTGACT
GCCTTGTGGACGGACGAAAGAAGGGAAGTTACAGAAGGGGGCAGTGAAGGCTCGCCAAGTAGACAGCAAGCCCCCACCCCGTCAGTCCTGTGTTGCCGTA
GCGTGCCCTACTTCAATAAGGTATTACCTCGCCGATTTTAAAGGGGATGGGATTGGATTCATTCACTTGCATTCCTGCTAGCACTAAAAAAGCTCCGGTC
TTAACGCCCCTACAGAAGCTGTGCAGCCTTTCCTTAGGTTCGTAGAGTCGGGTTTCCCGTTTACCCACAACGGAGGAGCCGCCCCCACCAACCAAAGCAG
GTAGGCGGCCACGGTTCATAACGCACTCTTCGCACAACAGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTATGAGATACCAT
AAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTCAAAACTTG
ATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGATTTACATTA
TACGCTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTA
GTACGAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGC
CTATTACACGGCTCACAAACTC