Detailed information on CNT30220912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Hordeum vulgareOryza sativa82.6330.7787.76433forward
CNT30673559Hordeum vulgareSetaria viridis21.3739.4490.18112reverse complement
CNT30633047Hordeum vulgareCapsicum annuum20.617.9686.11108reverse complement
CNT30188310Hordeum vulgareSecale cereale79.252.3395.66415forward
CNT30300556Hordeum vulgareTriticum aestivum89.6927.596.38470forward
CNT30369712Hordeum vulgareOryza glumipatula29.263.2288.24153reverse complement
CNT30109402Hordeum vulgareOryza longistaminata82.6332.8887.53433forward
CNT30100129Hordeum vulgareOryza rufipogon26.7213.3398.57140forward
CNT30116403Hordeum vulgareOryza nivara26.7261.9596.43140reverse complement

Expression of CNT30220912

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MGVRGGYLVFISQAGIADPISVYTVYRDISKRNLYLISF*

>peptide 2 (48 aa)
MAEWLIAPVLKTGIVLGTIEGSNPSLSFCLLNMFVSFIFFILSLIFLS*

Sequence

>CNT30220912
TCAAATAAAGTTGACTACATATTTGATCCCTCACTTAACCAAAATTGTAAAAAAATACAAGAAGTAGGAGGGGTTTAATCATGAATCCATTGGTTCTTCT
CTTTAATTAAAATTTATTACTTAACCTCTTTTTTATTTGGATATGGGGGTGAGAGGAGGTTATTTAGTCTTTATTTCACAAGCGGGTATAGCGGATCCTA
TATCCGTGTATACAGTATACAGAGATATATCGAAAAGGAACTTGTATCTGATATCTTTCTAGAGGTTAATAAATATTTTTATTTTTTATATGGCTATGTT
CTATTTGTAGGAGTAAAATAAGGATTAGGCGGTGGAGAGATGGCTGAGTGGTTGATAGCTCCGGTCTTGAAAACCGGTATAGTTCTAGGAACTATCGAGG
GTTCGAATCCCTCTCTCTCCTTTTGCTTATTGAATATGTTTGTTTCTTTCATTTTTTTTATTCTGTCCCTTATCTTTCTTTCATAAAAAGGAATGAATGG
CTTGGCTAGATAGAATAACCGAGC