CANTATAdb - search

Detailed information on CNT30220886

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001340, E-value = 4e-72

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3082954	Hordeum vulgare	Brassica juncea	36.65	16.53	90.77	195	forward
CNT30623039	Hordeum vulgare	Daucus carota	49.25	100	93.89	262	reverse complement

Expression of CNT30220886

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPRAEVRVPSAAPLKYEPRGLAIASPRGSYQALRR*

>peptide 2 (75 aa)
SSALALKMNGAKRSAEAVGCQNASVGEHSALEGSNRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHRG*

>peptide 3 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

Sequence

>CNT30220886
GGTCGAGCGCCCTTGCACTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCATTCCGCCTTAGAGGG
AAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTT
TCCTCCGCAAGGTTCGTCCACAGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAATAGGTCAATATTCATGTACTACCCCTT
GTTAGTACGGAGGGACGGAGGAGGCTAGAAAATGCCTCGAGCAGAGGTCCGAGTACCAAGCGCTGCACCGCTGAAGTATGAGCCCCGTGGACTAGCAATT
GCTTCTCCACGAGGCTCATACCAGGCGCTACGGCGCTGAAGTATGTAACCGATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACC
TGTACCCAAAACCGACACACGTGGGTAGGTAG