Detailed information on CNT30220864


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 1e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299594Hordeum vulgareTriticum aestivum33.3359.3999.78449forward
CNT30586133Hordeum vulgareMusa acuminata50.2630.6290.25677forward
CNT30210175Hordeum vulgareHelianthus annuus17.9764.3694.63242forward
CNT3056795Hordeum vulgareAmborella trichopoda21.5354.5192.41290forward

Expression of CNT30220864

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEPREMVAYYTAH

>peptide 2 (60 aa)
NLHSLLPLISSLYHIMGVYRRSQRLARKGCYTKHYYLTTKKEKTIVVTRLTIVVRPAALA*

>peptide 3 (48 aa)
ESPLTASPNILPLPHHGGLQEIPETRSERLLYQTLLLNYKERKDYSSH*

>peptide 4 (52 aa)
MGLDSFTCIPASTTKSSGLNAPTEAVQPFLGFVESGFPFTHNGGAAPTNQSR*

>peptide 5 (69 aa)
MGIIFLEKCRFSMKSFLSIDVSGLRRYSTLREECNGMDGRGLPAPKSDDSLVPLSIGTLWHTTATTPAL*

>peptide 6 (31 aa)
MQIFYEILSFHRCIWSETVQYSTRGMQWDGW*

Sequence

>CNT30220864
GGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGACTCGCTCGGAAAGGCTGCTATACCAA
ACATTATTACTTAACTACAAAGAAAGAAAAGACTATAGTAGTCACTAGACTGACTATAGTAGTCCGTCCGGCTGCTCTTGCTTAAATCATTACTCTTCAT
TCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACTACCATTTAGTTAGGTAGGGACAATCAATCCATAGTTACGGGAATAACGGAATACATGGGGATA
ATTTTTTTAGAAAAATGCAGATTTTCTATGAAATCCTTTCTTTCCATAGATGTATCTGGTCTGAGACGGTACAGTACTCTACGAGAGGAATGCAATGGGA
TGGATGGTAGAGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCTATAGGGACCTTGTGGCATACAACCGCCACGACTCCTGCGTTATA
GCCGCCCCTTTCTCTCTTTCTTTTGACTGCCTTGTGGACGGACGAAAGAAGGGAAGTTACAGAAGGGGGCAGTGAAGGCTCGCCAAGTAGACAGCAAGCC
CCCACCCCGTCAGTCCTGTGTTGCCGTAGCGTGCCCTACTTCAATAAGGTATTACCTCGCCGATTTTAAAGGGGATGGGATTGGATTCATTCACTTGCAT
TCCTGCTAGCACTACAAAAAGCTCCGGTCTTAACGCCCCTACGGAAGCTGTGCAGCCTTTCCTCGGGTTCGTAGAGTCGGGTTTCCCGTTTACCCACAAC
GGAGGAGCCGCCCCCACCAACCAAAGCAGGTAGGCGGCCACGGTTCATAACGCACTCTTCGCACAACAGATCCACTTTGAAGTTGACTTATTCGCTCGGC
CAATCGTCGGAATGTGTATGAGATACCATAAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAAC
GATCTGACTAGAAAGTCATTCAAAACTTGATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTT
GGAATTGATCCGCTACGAGATTTACATTATACGCTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTC
GGATTCGGCAAGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAA
GTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACAA