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Detailed information on CNT30220801


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675387Hordeum vulgareSetaria viridis74.2370.9495.14288forward
CNT30524663Hordeum vulgareSetaria italica94.5963.0699.18367forward
CNT30641615Hordeum vulgareNymphaea colorata92.5364.888.02359forward
CNT30396824Hordeum vulgareTriticum turgidum86.0833.1799.4334reverse complement
CNT30511593Hordeum vulgareSolanum lycopersicum35.3121.0488.32137forward
CNT30552690Hordeum vulgareOryza glaberrima94.5923.9798.37367forward
CNT30442196Hordeum vulgareAegilops tauschii78.6135.97100305reverse complement
CNT30720843Hordeum vulgareTriticum spelta55.4110099.53215forward
CNT30347837Hordeum vulgareEragrostis tef94.5947.698.37367reverse complement
CNT30363261Hordeum vulgareSorghum bicolor94.0728.6799.18365forward
CNT30596724Hordeum vulgareOryza meridionalis94.5915.1799.18367reverse complement
CNT30331560Hordeum vulgareDioscorea rotundata39.4330.394.77153forward
CNT30104431Hordeum vulgareOryza rufipogon94.5956.6497.82367reverse complement
CNT30497700Hordeum vulgareDigitaria exilis47.943498.92186reverse complement
CNT30551087Hordeum vulgareOryza brachyantha51.2966.7898.99199reverse complement
CNT30115272Hordeum vulgareEutrema salsugineum35.3128.1988.32137forward

Expression of CNT30220801

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSALSSDFPRASGITAETATGSPPIRGWSDRSMEIG*

Sequence

>CNT30220801
GCGTTATCGTGCCTACGGTAAACGCTGGGTAGCCAAGTGCGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCT
CCTCCGACTTCCCTAGAGCCTCCGGTATCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGAAGTATGGAAATAGGATAAGG
TAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACGATTTGAACCTTGTTCCTA
CACGGCCTGATCAAATCGATCAGGCACTTGCCATCTATCTTCATTGTTCAACTCTTTGATGAAAAGATGAAAAAACCAAAAAAAAGCC