Detailed information on CNT30220794


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FN37|PSKR2_ARATH, E-value = 3e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691340Hordeum vulgareOryza sativa3.129.6589.5567forward
CNT30150279Hordeum vulgareBrachypodium distachyon4.5824.3286.8799forward

Expression of CNT30220794

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKACAISWCVCCLKTGVSAWFGGETSMETRA*

>peptide 2 (31 aa)
MSSTRARANEGMCHFLVCVLLENWSVCMVWW*

>peptide 3 (32 aa)
MVDRWRVSCERYQGAAARRGSQGTVRCSPRGP*

>peptide 4 (34 aa)
MTGCSRGRMSWPRLLSVSLPSMLCSKQPKNSYRV*

>peptide 5 (71 aa)
PLKLLLLRSIVIRFVQLLGANGSSPDMLLLFKRRSSNFLSCPIETGILPLKLFLSRSRVTRLLRLVMLYHR*

>peptide 6 (61 aa)
MAQMGSKEHMDIWAPSGPNCHCHESQNKFSLKRFFCATPCYSLLCIDSQIDPGFRGQLHQF*

>peptide 7 (60 aa)
MDGKCPINKLLEMFSTWRVWGRAEEGNSWSVPLRWLKLTSRIVMLLDDTNSDGRPLESEL*

>peptide 8 (50 aa)
MCDRPILPTGDPFPLAASVSFSHEVASPPFCESPTRNWRREPLSCFVRSW*

>peptide 9 (46 aa)
MLVSDGIMYMYHAPLSIEHGKQQWLLCYSLVVVQMPEELSPCIFLIV

>peptide 10 (42 aa)
MELCICIMRPYQLNTGNNNGYYVILLWLCKCRKNCHLVYFLLC

>peptide 11 (41 aa)
MGQNNVANSLKWHRWGRKSTWTFGLHLDQTAIVMRAKTNFH*

>peptide 12 (37 aa)
MSHPWDKTTWQIVSNGTDGVERAHGHLGSIWTKLPLS*

>peptide 13 (36 aa)
MFPSRPLKGHSTCVIVLSCPQVIPSHLLHPCRSPMK*

Sequence

>CNT30220794
CTCCACTGAAATTATTGCTCTTGAGGTCAATTGTTATCAGATTTGTACAGTTGCTCGGAGCAAACGGCAGCTCCCCTGACATGTTGTTGTTGTTCAAACG
GAGGTCCTCCAATTTCTTGAGTTGTCCTATAGAAACTGGAATCTTGCCGCTGAAGCTGTTCCTTTCAAGATCAAGGGTTACAAGACTTCTGAGGTTGGTT
ATGTTGTACCATCGATAGCTCCATGTAAATCATTGTTAGGCAATGACAGGTACTCCGATGATTTTGCGTTGAAGAGTTCATTTGGGATTACTCCAGTGAG
GTTGTTGTATCCAGCCCCGAGCTCTCTAGCCTGGAGCAATTACCAAGACTTGGGGGGATGCTGCCACTGAATTCGTTGAAACACAGTTCAAACACAGTGA
GGGTGGTGAGGTACTACAGAGTTGAGTTGGTATCTGCCCAGTAAAGCTGTTATTGCTGGCATTGAGTGTGACCAGATTCCCCATTGTGATGGATGGAAAG
TGTCCTATAAATAAATTGCTTGAGATGTTCAGTACCTGGAGAGTCTGGGGCAGGGCCGAAGAGGGCAACTCGTGGAGTGTTCCATTGAGATGGTTAAAGC
TGACATCAAGGATTGTGATGCTGCTGGACGACACCAATTCTGATGGTAGACCGCTGGAGAGTGAGTTGTGAGAGATATCAAGGTGCTGCAGCGCGTCGAG
GATCCCAAGGGACCGTGAGATGTTCCCCTCGAGGCCCTTAAAAGGCCACAGCACATGTGTGATCGTCCTATCTTGCCCACAGGTGATCCCTTCCCACTTG
CTGCATCCGTGTCGTTCTCCCATGAAGTAGCGAGTCCACCGTTTTGTGAGAGCCCGACGAGGAACTGGAGAAGGGAGCCCCTCTCCTGCTTCGTGAGGAG
CTGGTGAGAGAGGCCAAGGAGATGAGTAGCACAAGAGCAAGGGCAAATGAAGGCATGTGCCATTTCTTGGTGTGTGTGTTGCTTGAAAACTGGAGTGTCT
GCATGGTTTGGTGGTGAAACTAGCATGGAAACAAGAGCATAAATGGTTGTCTATTAATTCAAGAGCTTGAGGGGAAAGAAGAAGCCGTCATTTTGTTGTG
CTTCTTGCAGTCGTTGTCAGCACAAAGGAAAAACGGTTGGTTCGGACTCTGAACATTATAATTGGATACTAAGCGTGCAAAATCTTTCTTTTGTAGTCGT
CCACTATTTCGGACTCAATCCATGTAGAATGTTTACCACGAGCCATAAATTATTTCTCTGATCAATCACTTCTTGATATACCCCGGGAGGATTGAGCTGG
AACCATCTCCGTTGAGCACTCCGGGAACTACCACCAGGGACGATCATCGAGGAACCAACACCATCGAGGATGACAGGCTGCAGCCGTGGACGAATGTCGT
GGCCGCGCCTGCTCAGTGTCAGCCTCCCATCCATGTTGTGTTCCAAGCAGCCGAAGAACTCGTACAGAGTATGAGCCATCCATGGGACAAAACAACGTGG
CAAATAGTCTCAAATGGCACAGATGGGGTCGAAAGAGCACATGGACATTTGGGCTCCATCTGGACCAAACTGCCATTGTCATGAGAGCCAAAACAAATTT
TCACTGAAAAGGTTTTTCTGTGCTACTCCTTGCTACTCCTTGTTATGTATTGACTCGCAAATAGATCCAGGCTTCCGAGGACAGTTACACCAATTCTAGA
GCATATATTGTCCTCAATCCTCCTGATTTTCCTACCATCATTTCCATAGTATTCGAGTTGTAAAGCCCCGGCCTGTGGATCTAACTGAATAGTTTGTCAT
GTCCATGAATCGGCTGTTTCATTGAGCCTGGTCTGTATCCACATAACCATGAGACAAAATATTTCATCCAGTAATTAGTGGACATATCGAATACGGAGAA
TCAACATCACAGTTCTGAGGAGCTTCATTTCCCAAAATGTCTGGAGCATATCATCTTGATCATTTTTGAAGGATGGGTGCTGGACTTGGCACATTTTCGA
GAGGAGTACACTCTCAATAAATGTTGGTTTCTGATGGAATTATGTATATGTATCATGCGCCCCTATCAATTGAACACGGGAAACAACAATGGTTATTATG
TTATTCTCTTGTGGTTGTGCAAATGCCGGAAGAATTGTCACCTTGTATATTTCTTATTGTGCT