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Detailed information on CNT30220785


BLAST search results

BLAST vs Swiss-Prot:
sp|P12862|ATPAM_WHEAT, E-value = 2e-113

BLAST vs NONCODE:
NONORUT004354, E-value = 3e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678383Hordeum vulgareSetaria viridis18.5760.5396.62207reverse complement
CNT30548565Hordeum vulgareIpomoea triloba14.7134.3194.51164reverse complement

Expression of CNT30220785

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRESQHQGLTQIERRRPLRHIVPIPVLNYRGLVS*

Sequence

>CNT30220785
GTAATAATTATTTGAAAAAAGTCAAAAATAGCCTATTGGGGTTCAGTTGGCGAGAAAAGCCTTCTTCCTACATCTGCGAGTAAGGGGCAACCTTTTTGAT
TAATTCACAGGTAAGGCAAAGTGCTTTCTTTTAAAGAAGCATCTGGTTCCATCTTTCTTTCGTTAGTTAAGCCACCTTTTTCTAAGAAGGATTTTTGTAA
TTCTGGATTAATAGTACTTAGAATGGCTTTTTCATATTGAGAAATTCTGTCTAGTGGCATTCGATCACAGAAGCCGTTGACAGCAGCATAAATCACAACA
ATTTGTTTTTCAATTGGAAGTGGTTCATATTGTGGTTGTTTGGGCACTTCTGTAAGCCTTGCACCTCTATTGAGTAATGCGTGAGTCGCAGCATCAAGGT
CTGACCCAAATTGAGCGAAGGCGGCCACTTCGCCATATTGTGCCAATTCCAGTTTTGAACTACCGCGGACTTGTTTCATAGCTTTCAACTGAGCGGCAGA
CCCGACGCGACTGACGGATAAGCCAACGTTAATAGCTGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAGATTTGTCCATCTGTAATGGAGATC
ACATTGGTGGGGATATAGGCCGATACATCTCCAGCTTGTGTTTCAATCACGGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCA
GCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAACGCTTTTGAGCTTTCTTCAGAATTTGGCCCGAACTGTTCGGCAGATTCCCACG
CGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCGTAGCGCGCGCCCTGTAGTTTTGAAGC
AGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTT
CTGAGCCAGGATCAAACTCAGATTTTGACTATGATTGGGCCGAACAGTGGTAGAACCTGGTGAACCGGGCCTACTACTAAACATTGATTCTCTCTCCTAA
CCACTCTTAAATATG