Detailed information on CNT30220769


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3D9|PSAC_SACHY, E-value = 2e-48

BLAST vs NONCODE:
NONORUT006211, E-value = 9e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381120Hordeum vulgareManihot esculenta13.0753.2381.82132forward
CNT30201080Hordeum vulgarePisum sativum22.8711.685.28231forward
CNT30395374Hordeum vulgareTriticum turgidum93.1788.8693.73941forward
CNT30258499Hordeum vulgareAvena sativa22.5775.592.98228forward
CNT30608564Hordeum vulgareGossypium raimondii8.6125.5987.3687forward
CNT30680248Hordeum vulgareTriticum urartu25.8487.8891.19261forward
CNT30434219Hordeum vulgarePapaver somniferum25.8472.386.21261forward
CNT30327547Hordeum vulgareAsparagus officinalis79.925.6182.78807forward
CNT30149300Hordeum vulgareBrachypodium distachyon5.9420.0791.6760forward
CNT30585663Hordeum vulgareEchinochloa crusgalli59.4198.5288.5600forward
CNT30551956Hordeum vulgareOryza brachyantha53.3721.3288.87539forward

Expression of CNT30220769

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSHMYCRHHTKQWFIQTSKLKIYFFNPFVRKREKSQET*

>peptide 2 (61 aa)
MKVHRFPISNGNRRHLSIYNPPLIELRDPPVGNHNRTHKIIRRNSNKQIDIVYHLTILFPL*

>peptide 3 (40 aa)
XIGQAAKVAKVVINPVNKMDPNESPSIPNLQWKSKTSIHL*

Sequence

>CNT30220769
NNNATTGGCCAAGCTGCTAAAGTAGCTAAAGTAGTGATAAATCCTGTCAATAAAATGGATCCTAATGAAAGTCCATCGATTCCCAATCTCCAATGGAAAT
CGAAGACATCTATCCATTTATAATCCTCCTTTAATTGAATTAAGGGATCCTCCAGTTGGAAATCATAACAGAACGCATAAGATCATTAGAAGGAATTCTA
ATAAACAAATAGATATAGTATACCACCTAACGATTTTGTTTCCCTTGTGAGGTAAAAAGAAAAATAATGAACCGGCAAATATCGGCAAAACAACAAGTAT
TGTTAACCAAGGAAAATAACTCATGATAAAGTGATAAAGACAAGATACGTTTTGACCAGAAAAGGCCGTGCTCGATTATTTCGAGCACATGCTTCTTCGG
TAAAGAGGAATCAGACGATTCAAATGAAGTTTTGTGTAACGTATCAATAAGATAAATCCATGCTATGGGTTGTTTCAGGCCCTAAATAAACGCGGACACT
TCAAAAATCTGTCGGGCAGGCAGATTCACATCTCTTACAACCCACACAATCTTCGGTTCTCGACGCGGAAGCAATTTGCTTGGCTTTACATCCATCCGAG
GGTATCATTTCTAATACATCTGTTGGACAAGCTCGTACACATTGAGTGCATCCTATATATGTATCATAAATTTTTACGGAATGTGACATTGGATCTATAA
ATTTTTCTTTTCAACATAAATTTTTTCGATCTGGTAAAAAGAAAATTAGTACTATATGAGTCATATGTATTGTAGACACCACACGAAGCAATGGTTTATC
CAAACTTCAAAATTAAAAATCTATTTTTTTAATCCGTTTGTGAGAAAGCGTGAAAAGAGCCAAGAGACTTGAATTTTGGACTTCAACAATAAGAAATAAT
TCTACAAATTGTACAGACGATTTCGAATTAGCCAATTTATTTTATTGGCTATCGTCTTTTCAATATAAATTATTGCAATTTGAATATTGCAATATCAATG
AATACAAAAT