CANTATAdb - search

Detailed information on CNT30220734

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007284, E-value = 3e-70

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30597026	Hordeum vulgare	Oryza meridionalis	8.97	70.19	89.82	226	forward

Expression of CNT30220734

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MGFFKLCNTFTSLGSLEKGTNPISALFRGYRSFTADLYPTVG*

>peptide 2 (38 aa)
MNRVRSPYEFKLVKKWTSELSLQPLQGGQLSHLTLALK*

Sequence

>CNT30220734
GGATGAAGGTTTTTTTGGTCACATTATTCTGGCAACAGATTGTCTCTCGGTGGTATAACAACCCCGTACGGCGTAACAAACAGTAGCTTGATTTCACTGA
ATGCTTTTGTGCAACAGATAGATAGCTGAGCAAGCAATCCTCCCCTGAACTGTCTCACAAAATACGACTGAGCAGGGCCAGAGACCCCTAGTCTATAAGA
GTAGGTGAGAAATGTGCATTAGGGTAAGAAAGAAGTAAAACATGGATGACATTTTTGGATTCTAAGAAAATACTGCTGGGAAAGCAGAAGTCTTAAGCCA
TATTACCTCAACCATTGCTCAATAGCTGGGTCTACGACCCGGTAACCTGAGACGACCGTTCTAAGATCTTAGCCTTTCAACTCAACCAGATTAGCCTTTT
TATTGAACTACGTTCCCTTTCACTCCCTCAACGGCGCATTGAGGAAGACAGCAATCCAACTCGATCATCAGAACAGTTAGGTTTTAAACACAAGGCGGAT
GACGACAAGTTAGCATACGGGAAAGATACCTGTGGAAGGCCCATATCATGTATTCTATACCAGTGAGTTGAAGTATCATATCCCTTCCTTTCAAAACTGG
CATCTTTTTCAACTCTTGAGAAAAGGTAAGATTCGATAGAACGCAGTAACCCAGAGGAAGTCAAGAGCTCACAGTAACCTAAAGCTGCCAATAGCAAAAG
ATAGAGGAGGAATAGTTTCTCATGCCGAGATAAAAAAACTCAAGCGCCATCCGTTTCCTATTTGATTTCAGAACAGCGGAATATCATCACCCGTGGTTCA
CTTGAGCATGAATAGAGTTCGGTCTCCTTATGAATTCAAGTTGGTAAAGAAGTGGACTTCGGAGCTTTCGCTACAACCCCTCCAAGGCGGGCAACTGTCT
CATTTGACACTAGCACTTAAATAAAGAAAGGTAGGAAGGGCTCCCTCCCTCTAATGAAATGGGCTTCTTTAAATTATGCAATACGTTCACCAGTCTCGGA
TCTTTAGAAAAAGGAACCAATCCTATTTCGGCACTCTTTAGAGGCTATCGCTCGTTTACCGCAGATCTCTATCCCACAGTTGGCTAATAAAATCGCCTTG
GCAATGTGTCAAGTCCTTTCAGTCAGAGTTCAACTCTTCAGCGAAAGTGAAAAATCTACGGTCTTCCATCCGCGGAGGTAGCCATGGACTCCATAGTATA
TGTTGGTAGCTAGCGTACAGGCTTGATGTGAGGGGGGGTTGTTACCTATTCTATTCCCTTGCTTGGATAAAAACACCCATCTTTCCGTACGAAAGACACG
CAACTAGAGCAACTTGATATTACGTATGTAGACCTGGCCTCCCTCAATAATAGCTGGCTCACCCGATTGACGATTTTCAAAGATCTACGCCAAGCGCCTC
GAAGCGGGGATCCACTTTTTACTACTTTAGAAAGTGAGAAGCCTTTGGCTTGATTTCTTCTCTGGCTTCTTTATGTTTACCCACGCCGCGGCTATTCAAT
AAAAGGATTGGTAGTTAGTTGCCTCACCCTATTGGTTGTTGGTTTTCTTTCTCCTCTGCGTTCGTGAAAAGCTAGTATGCTCGCGGAAATCGTCTAAAGG
AAACTACTCGCTAACTCGCTAACAAGACGGACTTCTTCCTCTGGCTCTGCCAGGCTATGCTGCTCGCCTAAATCGGTATCAATAACTTCTATCATACTTC
GACCTCTCATTGGAATGATAAGTTGGCTACGACGAACTAATAAGTTTCTCTTCTTGTCACCTTCTTTAAGCCTTTCCTTCCGCTTCCATCGATAAATATA
TATAGATAAGCTTGGAGAAGCGATTAAGGTGTTTCCACTCTTAGGTTGTTTAATATGCGAAGACCGTGTCAATCACTACACCAGTGATACGAAAAGCAAG
CATTCTTCTCCAGCTGACGTACCGACGCCTCACTACTACTTAATTAGTGAAAGATACGTTGGGATGTTTTCAATTCTCCATCAAGAGGCGGGCAACTATC
TCTTTTAACACTAGACTTCGGATCGCCTTCCTACTGGTTTTCTTCTCGGTCTCCCCAACTAGGGGAAACCTCAAAGCAAACAACAGAGCAACACCTATCT
TTTTTCTTTAAGCACTGAACATCCGGATCCCCTTCCGACTTGCTTTTCCGGGCACTGGTCTTTCTAACAACTGGAACTCGTCTCCCTTTTCCTGATTCAC
ATCTTCTTCGGCTTTTGCTACGGTCTGTTCCTTCCTTCAGTCAGTCCTTCCTTCAATATTTTTGCCTGCGGATCTCTCTCTTCAAAACATATATATCTTT
CGGCGCCAGTCTTTCCTGCCTTACCTTAACCCCGCTTTCACGTGGCGAATCGGTATGAGGTTTCAGTGATCACTTTATGGTATTCTTTAAGCTTTCTTGG
TCACCGGACAGAGTGAGAACTGCTCAGCTTGCTTTCTTTCCCTAGCACACACTTAGTAGATAGTAGGCACAGGTCCGCTAAGAGCTCATCGAACTTGGCT
TGTAGAGTGAGACCTGTGC