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Detailed information on CNT30220727


BLAST search results

BLAST vs Swiss-Prot:
sp|P05621|H2B2_WHEAT, E-value = 1e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Hordeum vulgareOryza sativa26.6732.8695.19208forward
CNT30675682Hordeum vulgareSetaria viridis27.4447.2493.93214forward
CNT30523142Hordeum vulgareSetaria italica32.1848.2793.63251forward
CNT30518328Hordeum vulgareJuglans regia35.1352.984.31274forward
CNT30618877Hordeum vulgareSesamum indicum35.3835.0781.16276forward
CNT30179138Hordeum vulgareSecale cereale37.4436.1896.92292forward
CNT30286104Hordeum vulgareTriticum aestivum59.2357.3296.1462forward
CNT30383318Hordeum vulgareTriticum turgidum66.9256.893.3522forward
CNT30565715Hordeum vulgareActinidia chinensis35.3835.1685.14276forward
CNT30586986Hordeum vulgareMusa acuminata32.8272.3288.67256forward
CNT3086649Hordeum vulgareVigna radiata34.135.6683.46266forward
CNT30552027Hordeum vulgareOryza glaberrima36.4152.6995.77284forward
CNT30171046Hordeum vulgareTrifolium pratense35.3877.7580.43276forward
CNT30434666Hordeum vulgareAegilops tauschii62.9566.8995.32491forward
CNT30244799Hordeum vulgareAvena sativa50.955.2989.67397forward
CNT30656221Hordeum vulgareTriticum dicoccoides66.9259.5993.68522forward
CNT30457287Hordeum vulgareSaccharum spontaneum36.1533.8196.81282forward
CNT30130711Hordeum vulgareLolium perenne36.5441.9195.44285forward
CNT30129800Hordeum vulgareCorymbia citriodora35.6434.5389.93278forward
CNT30719869Hordeum vulgareTriticum spelta50.1368.4895.4391forward
CNT30363575Hordeum vulgareSorghum bicolor36.4130.895.77284forward
CNT30596761Hordeum vulgareOryza meridionalis27.4427.0992.06214forward
CNT30369169Hordeum vulgareOryza glumipatula37.3150.7995.53291forward
CNT30570929Hordeum vulgareVitis vinifera33.5939.0580.92262forward
CNT30327286Hordeum vulgareAsparagus officinalis36.2831.3191.17283forward
CNT30496069Hordeum vulgareDigitaria exilis36.7935.9693.38287forward

Expression of CNT30220727

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGWTCFSTLKM*

>peptide 2 (61 aa)
LRVFSKHSAIPMKFSNSTACNINIKIDRQLQLIQRTSQQSVGNHTAFRQQLLLLLLAVADR*

Sequence

>CNT30220727
TTTACGAGTCTTCAGCAAGCATTCAGCAATTCCCATGAAATTCAGTAATAGTACTGCTTGCAACATAAACATTAAGATAGATCGGCAGCTTCAGCTCATA
CAACGAACGAGCCAACAAAGTGTTGGCAACCATACAGCATTCAGACAACAACTACTACTACTTCTACTGGCAGTGGCAGATAGATAACCAGGTCAGCAAC
CACTAAGAGGAGACAACGGCAGACAACCGCATCTGCTACTTCAGGCGACGGACGCATCGGCAGTCTAGGAGGAGGTGAACTTGGTGACTGCCTTGGTGCC
CTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCG
AGCTTGGCCGACTCCCCGGCGAGCTTCTCGAAGATGTCATTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCT
GCTTCAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTGGCCTTGCTGCCCTTCTTCCGGCCCCTCGTCTTCGCCTCGCCGCCGGCCTC
CTTGGAGGCCGTCTTGCCCGCCGGTAGCCGCTTCTCGGCCTTGGGCTTCTTGCCTGCCGGGGTCTTCTCTGCTGCCTTCTCCACCTTGTTCTCGGCGGCC
GGCTTCTTGTCTGCCTTGGGGGCCATGGCTGCGGCTGGAGCTTCGGAGGTGAGAGAGGGAGTGAGGTGTTTCGCTCGGAG