Detailed information on CNT30220717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538116Hordeum vulgareBrassica napus90.0826.2495.91318reverse complement

Expression of CNT30220717

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLIPQIPSLFLLREKKLTTRRPSTSTRHCSVRLSPIAKNSPLLPAVGVWAVSQSQCG*

>peptide 2 (31 aa)
TDLKSHLQTLYAQSFRITLASSVLPRLLAQS*

>peptide 3 (53 aa)
DRLEKPPTDALRPIIPDNACILCLTAAAGTELADAYSSDTVIVSSSRKEVDDP*

Sequence

>CNT30220717
CGACAGACTTGAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCC
GATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTTCGAGAAAAGAAGTTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTT
TCGCCCATTGCGAAAAATTCCCCACTGCTGCCTGCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT
CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGATGACG