Detailed information on CNT30220676


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 4e-43

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530180Hordeum vulgareEucalyptus grandis36.0638.5296.06203forward
CNT30316655Hordeum vulgareCorylus avellana44.5879.6893.63251forward
CNT30545885Hordeum vulgareIpomoea triloba45.1255.9590.94254forward
CNT30628786Hordeum vulgareVigna unguiculata45.4752.2492.58256forward
CNT30435195Hordeum vulgareAegilops tauschii45.8344.5699.22258forward
CNT30241998Hordeum vulgareAvena sativa45.1232.0798.43254forward
CNT30655772Hordeum vulgareTriticum dicoccoides45.1231.1398.43254forward
CNT30456592Hordeum vulgareSaccharum spontaneum45.1230.994.49254forward
CNT30130551Hordeum vulgareLolium perenne45.1237.399.21254forward
CNT3067544Hordeum vulgareLeersia perrieri45.1215.4496.85254forward
CNT30623440Hordeum vulgareDaucus carota45.2912.8190.59255forward
CNT30720110Hordeum vulgareTriticum spelta45.8340.8299.61258forward
CNT30338860Hordeum vulgareEragrostis tef45.8331.3997.67258forward
CNT30369422Hordeum vulgareOryza glumipatula45.1219.4295.28254forward
CNT30326410Hordeum vulgareAsparagus officinalis44.5820.9391.24251forward
CNT30576569Hordeum vulgareOryza barthii45.1220.9996.46254forward
CNT30582668Hordeum vulgareEchinochloa crusgalli39.9638.7997.78225forward
CNT30499448Hordeum vulgareDigitaria exilis44.7633.3896.83252forward
CNT30116662Hordeum vulgareOryza nivara45.1211.2496.46254forward
CNT30594254Hordeum vulgareEragrostis curvula45.1230.6498.43254forward

Expression of CNT30220676

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAARGRLRALRRRRWRRGRVWVGGGVDAR

Sequence

>CNT30220676
AATCGCACCACCTTGATAAGATCAACAAAGCATAGAATATAAGAGCAGACATGGAATGGATTAAAATCATTAAGACTAATAGCATACGGACACCAAAATT
TAAGCACGCATCGCATTACAGGAGTAGGCGATGAAATATTCAGGAAACATAATACTCCAAGGTTTCAGCTTAAAAGACAAACGGGACACATCTAAATGAG
TTCGGTTCTCGATTGGTAGGTCTTCTTCTTGCGCTTCTTGGCGCCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG
GCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT
CGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGCGCGAGGTCGCCTCCGCGC
GCTGCGGCGGCGACGGTGGCGGCGGGGTAGGGTTTGGGTTGGGGGCGGAGTGGATGCTAGGGT