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Detailed information on CNT30220581


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 4e-82

BLAST vs NONCODE:
NONSTUT000620, E-value = 4e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674447Hordeum vulgareSetaria viridis24.9327.7895.68185forward
CNT30178120Hordeum vulgareSecale cereale31.426.0698.28233forward
CNT30285265Hordeum vulgareTriticum aestivum31.430.9897.42233forward
CNT30368046Hordeum vulgareSorghum bicolor31.438.296.14233forward

Expression of CNT30220581

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVGRSPPRAAAATAVEAGAAG*

Sequence

>CNT30220581
TGGCATCAATCAGAGCAATGACAGCATAGCATACGGAACAAAACTTAAAGCTCGCATCACATCTCAGCAATAGGCGATCAAATATCCAGGAAACACAACA
TATTACTCCAAGGTTTCAGTTTTCAAAGACAAACTGGACACATAAATGAGTTCTATTCGCGATAGGTAAAAGAGCAGAGCAAACACAGGCCAGCTCTAAG
CCTTCTGGTTGTAGACATAGGTGAGTCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCACCGCACTCGGCGTTGGGGCA
CTCCTTCCTGAGCCTGGTTACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTG
GGTTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAG
TACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGT
GTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGGGGCGGTCGCCTCCGCGCGCTGCG
GCGGCGACGGCAGTGGAGGCGGGGGCGGCGGGGTAGGGGTTT