Detailed information on CNT30220487


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672456Hordeum vulgareSetaria viridis63.4377.195340forward
CNT30521002Hordeum vulgareSetaria italica63.4375.3994.71340reverse complement
CNT30548989Hordeum vulgareIpomoea triloba73.1328.5191.33392reverse complement
CNT30366518Hordeum vulgareSorghum bicolor49.8182.4192.51267forward

Expression of CNT30220487

Peptides detected in this lncRNA

>peptide 1 (41 aa)
PPSPTRRRRNQFQPNLHAHWYFDVTIGRSPWVLGRTTSVHT*

>peptide 2 (39 aa)
MKVSTILLRTGFVVHMSRAGKDLTKHLTTRADDSHAAPV*

>peptide 3 (50 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGSSAHFGGNFSLGACLSNTKRGFRSL*

Sequence

>CNT30220487
CCTCCGTCGCCAACTCGACGTCGTCGTAACCAATTTCAACCAAACCTCCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGGTCTTGG
GCAGGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACGTGCTGGCACTCAATC
AAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTCACTTCGGTGGCAATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCG
TTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCTGTTAAGGACAGGTTTTGTTGT
TCATATGTCAAGGGCTGGTAAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCTGTTAA
GGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGAA