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Detailed information on CNT30220389


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 4e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693799Hordeum vulgareOryza sativa14.8720.1987.6965forward
CNT30673503Hordeum vulgareSetaria viridis26.0945.7881.58114forward
CNT30178026Hordeum vulgareSecale cereale53.3241.7687.98233forward
CNT30283591Hordeum vulgareTriticum aestivum37.366.5388.34163forward
CNT30384303Hordeum vulgareTriticum turgidum24.2617.5298.11106forward
CNT30435366Hordeum vulgareAegilops tauschii53.5551.4388.46234forward
CNT30240211Hordeum vulgareAvena sativa37.357.695.71163forward
CNT30656408Hordeum vulgareTriticum dicoccoides37.341.998.77163forward
CNT30131491Hordeum vulgareLolium perenne40.0535.588.57175forward
CNT30679155Hordeum vulgareTriticum urartu40.7353.2989.33178forward
CNT30720193Hordeum vulgareTriticum spelta22.6518.1397.9899forward
CNT30149479Hordeum vulgareBrachypodium distachyon39.5944.9483.82173forward
CNT30101819Hordeum vulgareOryza rufipogon2730.8985.59118forward
CNT30576447Hordeum vulgareOryza barthii14.8721.6787.6965forward
CNT30604128Hordeum vulgareOryza punctata14.8722.4187.6965forward

Expression of CNT30220389

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MDTGDPIPIHEIRRDPWYTSTRRGEARIRFRSCRVVPGWAAAGAPS*

>peptide 2 (73 aa)
MRSDGIHGTQARGEARRGLDLDLAAWSRGGRQLGPLLDGEQQAALGEGRGEGVEELALQAVVGRRRVAAVQVPL

Sequence

>CNT30220389
CGGCTGGACAATGTGTATTGCCGAGTGACATGCATATGATGGATCGATCGGCACTGTACGCACACTGGACAAGTGATTAAAACCACACAGCGGTACAACG
AAAGGGATTAAAGAGCAAATGATCTAGCAGTAATTGTGTGCATCACGTAGGCAACAAGGTACAGCATCAAGTATCAACAGAAAGACATGGATACGGGGGA
TCCGATTCCGATCCATGAGATCAGACGGGATCCATGGTACACAAGCACGAGGCGAGGCGAGGCGAGGATTAGATTTAGATCTTGCCGCGTGGTCCCGGGG
TGGGCGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGCAGGCCGCGCTTGGTGAAGGGCGCGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTA
GGGCGACGCCGCGTCGCTGCCGTACAGGTCCCACTGC