Detailed information on CNT30220245


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30239996Hordeum vulgareAvena sativa11.9425.6785.7177forward

Expression of CNT30220245

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDHGSASTLSWTLISSYFYVKQYYQEIHMCFF*

>peptide 2 (36 aa)
MVIYLDRGDAVDYDEFMMMMRLTGWTMAVLVPSPGL*

>peptide 3 (56 aa)
VLLILLLSSSKTFMLSASKPPANCAMTNGAGEGTPPEEHVDWIVYLCLSLSKDRLV*

>peptide 4 (41 aa)
MLMIHETAEGLWLWKRVVGRCLLCTEMGGGWYVWVRVKAGS*

>peptide 5 (69 aa)
AAHLASQLLEDFHAVCVEASSKLRNDQRSGRRNTTGGTCGLDCLSMFISQQRQARVAQEEVVADKIFIC*

Sequence

>CNT30220245
GTGCTGCTCATCTTGCTTCTCAGCTCCTCGAAGACTTTCATGCTGTCTGCGTCGAAGCCTCCAGCAAACTGCGCAATGACCAACGGAGCGGGCGAAGGAA
CACCACCGGAGGAACATGTGGATTGGATTGTCTATCTATGTTTATCTCTCAGCAAAGACAGGCTCGTGTAGCACAGGAGGAGGTGGTGGCTGACAAAATC
TTCATATGCTGATGATACACGAAACTGCGGAAGGCTTGTGGCTTTGGAAGAGAGTGGTAGGGCGTTGTTTGCTGTGCACAGAAATGGGTGGTGGCTGGTA
TGTCTGGGTGAGGGTGAAGGCGGGGTCCTAGTCTGGGTGATGGTGATATATCTGGATAGGGGAGACGCGGTGGATTATGATGAATTTATGATGATGATGA
GGCTCACAGGATGGACCATGGCAGTGCTAGTACCCTCTCCTGGACTCTAATCTCAAGTTATTTTTATGTAAAGCAATACTATCAGGAAATTCACATGTGT
TTTTTTTAATCCTTACAAGTGATTTTTTCTAGGGACCGATTTTACCTAAGGTGTATTTCAGAATCTCAAGTATGGCACTTGTCAGAAACTCTGTTATTTT
GTCTTTGTTGGGAAGTCCTATGGAAAATCTGAGATACTCATCTTT