« Back to Hordeum vulgare search


Detailed information on CNT30220178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523685Hordeum vulgareSetaria italica14.5710094.44360forward
CNT30187493Hordeum vulgareSecale cereale7.6941.8598.95190forward
CNT30401101Hordeum vulgareTriticum turgidum21.8944.4599.63541forward
CNT30592607Hordeum vulgareMusa acuminata4.6527.1290.43115forward
CNT30437037Hordeum vulgareAegilops tauschii7.7355.298.43191forward
CNT30664530Hordeum vulgareTriticum dicoccoides4.8233.2499.16119forward
CNT30598800Hordeum vulgareFraxinus excelsior7.8151.8896.37193forward
CNT30210312Hordeum vulgareHelianthus annuus5.4651.7292.59135forward
CNT30480890Hordeum vulgareArabidopsis halleri6.6849.5595.76165forward
CNT3052251Hordeum vulgareAmborella trichopoda24.6910.3988.52610forward
CNT30103078Hordeum vulgareOryza rufipogon15.4697.797.64382reverse complement
CNT30495778Hordeum vulgareDigitaria exilis15.1889.7199.73375forward
CNT30175599Hordeum vulgareVigna angularis15.9424.4180.46394reverse complement
CNT30557320Hordeum vulgarePanicum hallii5.4630.4199.26135forward
CNT30335348Hordeum vulgareCynara cardunculus5.6738.6795140forward

Expression of CNT30220178

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVPQDPINPLRSTLPRYCSMEAGGLLFRSSARFFIKKIKKGGRD*

>peptide 2 (44 aa)
MVPQDPINPLRSTLPRYCSMEAGGLLFRSSARFFIKKIKKGGRD*

>peptide 3 (51 aa)
MTISLELQGPTHISIVYRGPRPEPHVQVSLHVARPCFYPRRCLRLCMGEEG*

>peptide 4 (44 aa)
CSGRHSYVLRMIPTGDYMRGLGNCRDALVTKVTGVTMEGFRGSL*

>peptide 5 (52 aa)
MCCVAPTHGHLVRSYGPVVDKPLIGGDWTGVLSSNDACGLSHSHPKWWPDSAW

>peptide 6 (43 aa)
MSFXWKRVGCFLEVRPGFSLKKSKRGGGIDLSNAYSVVPAWPH*

>peptide 7 (36 aa)
MWLVRAFIRGAACDSAWEKRAELQTFVFRALHCLRE*

Sequence

>CNT30220178
ATGTAGTGGTCGGCATTCCTACGTGCTCCGAATGATCCCCACTGGAGATTATATGAGGGGTCTTGGAAACTGTCGTGACGCTTTGGTGACGAAGGTCACC
GGGGTGACTATGGAAGGATTCCGTGGTAGTCTCTGACTCCCTCCAACTCAATCAATATCAAGAACATGTCGTGAGCATGGGGTTTGGTTAGGCTTGGTTG
AGTTTGTAAGAAAAGATAGTAGGTTGAGGGGCTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGG
CCGATAAGATCACTGAGATTGACCAGCCAGCTGGGTAGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCTTCCTTAGGC
TCCGAGTCACCTTCTTCTAAGCTCCGCTGGACGACACGGCATTCTCGTTCTATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATCCAATAAATCCACT
TAGGTCTACGTTGCCGCGATATTGTTCTATGGAAGCGGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGG
GATTGACCTTTCTAACGCATATTCTGTCGTACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAA
GCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTCNTGAGCATGGGGTTTGGTTAGGCTTGGTTGAGTTTGTAAGAAAAGATAGTAGGTTGAG
GGGCTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGGCCGATAAGATCACTGAGATTGACCAGCC
AGCTGGGTAGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCTTCCTTAGGCTCCGAGTCACCTTCTTCTAAGCTCCGCT
GGACGACACGGCATTTTCGTTCTATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATCCAATAAATCCACTTAGGTCTACGTTGCCGCGATATTGTTCT
ATGGAAGCGGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGGGATTGACCTTTCTAACGCATATTCTGTC
GTACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTT
GCTTTACCCAACTCCCCTTTTTGATAACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGANTGGAAGCGGGTGGGCTGCTTTTTAGAAGTTCGG
CCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGGGATTGACCTTTCTAACGCATATTCTGTCGTACCGGCATGGCCCCACTGATTTGTTTTCGATC
GGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTCCCCTTTTTGATAACAAGGCA
AAAACCTCCGACCCGACATTCATGAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCTCTTTTTTTTTCCCTAAATCTTGGATTTGGAAGTTGGTAAAG
ACCCACCCCTTGTTTAAGTCAGAATGAGTCCCCGAGACATTGGCTTCCGCCAACAGTGAACTATTAAGGATCGCATCCCGCGCATATTCTACATTATAGC
CTGCAACTAATTCAGCTTCCGCTTCTGGGAGATCAGACGGAGCTCGATTAGTTTCTGCTAGACGAGGAATAAGGAACATAACCAATACGGGGAACAAGGG
AATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGTATAGTATACCGGGGTCCCCGGCCAGAACCA
CACGTGCAAGTTTCCCTGCATGTGGCTCGTCCGTGCTTTTATCCGAGGCGCTGCCTGCGACTCTGCATGGGAGAAGAGGGCTGAACTGCAAACTTTCGTG
TTCAGAGCATTGCATTGTCTAAGGGAGTAGGGTGAGTAAGCTGCGCCTACCAAGCTAAGCTTTCGTCGAAAAGGCGTCACTGCTTCCTTTTCGGCGCCCG
CCCTTTATTTAGATGTTGGGGCAAGGCAAGCCCAAGGAAAGTCTAGGTTGGCGCTCCATCTCGGCCGGCATCCTGCTCTCGAGAGGGTGTGGTCCTTGAG
CGAACTAGTCATGTGCTGTGTTGCCCCAACGCATGGGCATTTGGTGAGGAGCTACGGTCCGGTGGTTGACAAGCCACTGATCGGAGGCGACTGGACTGGA
GTGCTTTCATCAAATGATGCATGTGGGCTGAGCCATTCCCATCCCAAGTGGTGGCCCGATTCGGCCTGGCC