Detailed information on CNT30220094


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 2e-69

BLAST vs NONCODE:
NONBRAT001321, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700039Hordeum vulgareQuercus lobata55.5765.2481.82319forward
CNT30279437Hordeum vulgareChenopodium quinoa59.4144.5280.35341forward
CNT30200358Hordeum vulgarePisum sativum56.2751.9382.35323forward
CNT30565750Hordeum vulgareActinidia chinensis48.9525.5782.56281forward
CNT30240007Hordeum vulgareAvena sativa60.6362.0394.83348forward
CNT30655661Hordeum vulgareTriticum dicoccoides61.6765.4398.02354forward
CNT30474628Hordeum vulgareSaccharum spontaneum51.5724.8989.19296forward
CNT306284Hordeum vulgareZea mays40.77109.3585.04234forward
CNT30622400Hordeum vulgareCajanus cajan54.8834.4389.21315forward

Expression of CNT30220094

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKRPTR*

>peptide 2 (33 aa)
NGITNNENQASTGTDLRTDIQHFSFKLPMTTRW*

>peptide 3 (42 aa)
MSSSVLFWYLRISRSATVPGRKRWGFLTPPVAGADLRAALVAS

Sequence

>CNT30220094
AACGGAATAACAAACAATGAAAACCAGGCATCGACAGGCACAGATCTAAGAACAGATATCCAACATTTCTCATTTAAATTACCGATGACAACAAGATGGT
GACACCAGACAGGCACACTACATCCACCATGGCACGAACATAAACTAGCACGCACATTTCCACCGCGGAACAAAGGCTAAGATGATGGACCTAACAAACG
ACCACAGCTTCCAGAGAGCAGCCTAGGCCCTCTCTCCACGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGC
GCAGAGGTTGGTGTCCTCGAAGAGGCCGACGAGGTAGGACTCGGCGGCCTCCTGCAGGGCGGAGACGGCGGAGGACTGGAAGCGGAGGTCGGTCTTGAAG
TCCTGGGCGATCTCGCGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGAGCAGCTCGGTGCTCTTCTGGTACTTGCGGATCTCGCGGAGCGCGACGGTGC
CGGGGCGGAAGCGGTGGGGCTTCTTGACGCCGCCGGTGGCCGGGGCGGACTTGCGGGCGGCCTTGGTCGCCAGC