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Detailed information on CNT3022005


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR0|TBB3_ARATH, E-value = 5e-121

BLAST vs NONCODE:
NONMEST001519, E-value = 4e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674888Populus trichocarpaSetaria viridis45.549.3685.1349forward
CNT3092760Populus trichocarpaSolanum tuberosum67.875.1479.81520forward
CNT30223001Populus trichocarpaHordeum vulgare36.2510085.25278forward
CNT30390564Populus trichocarpaTriticum turgidum36.6492.4384.34281forward
CNT30562825Populus trichocarpaActinidia chinensis67.894.283.46520forward
CNT30149545Populus trichocarpaBrachypodium distachyon11.626.4986.5289forward

Expression of CNT3022005

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRLNISWMEVEFPMKEEFLFWTFIICSSTSLVLILPLNMAEAVR*

Sequence

>CNT3022005
GGCTTAATATTTAACTTGTAGAACTGGGAAAGTAAGAATATAGGCAATTTTCCAACCCTACTTACTACTCAAACTGCTCAGACAGTGCAAATCACCACGC
GGAACTTAAAGCGGTAAAAATGTATGAAAAATAGCAGCAGCAGCAGAAGATAGACCTTGCACAACTCATTACATCTAGGCAGCCTCTTCCTCCTCCTCAT
CCTCGTACTCAAGTTCTTCATCAACGGTTGCATCCTGGTATTGCTGATATTCAGACACGAGATCATTCATGTTGCTTTCAGCCTCGGTGAACTCCATCTC
ATCCATGCCTTCCCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTGTGAATTGCTCACTCACACGCCTGAACATCTCCTGGATGGAGGTT
GAGTTTCCAATGAAGGAGGAATTCTTGTTTTGGACATTCATCATTTGTTCATCAACTTCTTTAGTGCTCATCTTACCCCTGAACATGGCAGAGGCAGTCA
GATAGCGACCGTGGCGTGGGTCTGCGGCGCACATCATGTTCTTGGAATCCCACATCTGCTGGGTGAGTTCTGGGACAGTTAGTGACCTGTACTGCTGAGA
GCCACGAGAGGTAAGAGGAGCAAATCCAACCATAAAGAAGTGCAGGCGGGGGAAGGGGATAAGGTTCACTGCAAGCTTCCTAAGATCAGAGTTAAGCTGC
CCAGGAAACCTGAGGCAGCAGGTGACACCACTCATTGTTGCAGAAATCAGATGATTGAGGTCACCAA