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Detailed information on CNT30220028


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549210Hordeum vulgareIpomoea triloba32.5437.0684.47438forward
CNT30501657Hordeum vulgareCoffea canephora32.548.9184.7438forward
CNT30207841Hordeum vulgareHelianthus annuus33.2116.6981.66447forward
CNT30154898Hordeum vulgarePrunus persica28.751.6181.91387reverse complement
CNT30574571Hordeum vulgareVitis vinifera28.086.1491.01378forward

Expression of CNT30220028

Peptides detected in this lncRNA

>peptide 1 (44 aa)
CSGRHSYVLRMIPTGDYMRGLGNCRDALVTKVTGVTMEGFRGSL*

>peptide 2 (44 aa)
MVPQDPINPLRSTLPRYCSMEAGGLLFRSSARFFIKKIKKGGRD*

>peptide 3 (43 aa)
MSFXWKRVGCFLEVRPGFSLKKSKRGGGIDLSNAYSVVPAWPH*

Sequence

>CNT30220028
ATGTAGTGGTCGGCATTCCTACGTGCTCCGAATGATCCCCACTGGAGATTATATGAGGGGTCTTGGAAACTGTCGTGACGCTTTGGTGACGAAGGTCACC
GGGGTGACTATGGAAGGATTCCGTGGTAGTCTCTGACTCCCTCCAACTCAATCAATATCAAGAACATGTCGTGAGCATGGGGTTTGGTTAGGCTTGGTTG
AGTTTGTAAGAAAAGATAGTAGGTTGAGGGGCTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGG
CCGATAAGATCACTGAGATTGACCAGCCAGCTGGGTAGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCTTCCTTAGGC
TCCGAGTCACCTTCTTCTAAGCTCCGCTGGACGACACGGCATTTTCGTTCTATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATCCAATAAATCCACT
TAGGTCTACGTTGCCGCGATATTGTTCTATGGAAGCGGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGG
GATTGACCTTTCTAACGCATATTCTGTCGTACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAA
GCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTCCCCTTTTTGATAACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGANTGGAA
GCGGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGGGATTGACCTTTCTAACGCATATTCTGTCGTACCG
GCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTA
CCCAACTCCCCTTTTTGATAACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCTCTTTTTTTTTCCC
TAAATCTTGGATTTGGAAGTTGGTAAAGACCCACCCCTTGTTTAAGTCAGAATGAGTCCCCGAGACATTGGCTTCCGCCAACAGTGAACTATTAAGGATC
GCATCCCGCGCATATTCTACATTATAGCCTGCAACTAATTCAGCTTCCGCTTCTGGGAGATCAGACGGAGCTCGATTAGTTTCTGCTAGACGAGGAATAA
GGAACATAACCAATACGGGGAACAAGGGAATACCGGACCATATCTG