Detailed information on CNT30220010


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Hordeum vulgareOryza sativa21.6721.0398.1580forward
CNT30687453Hordeum vulgareTriticum urartu29.6614.8597.86794forward
CNT30115707Hordeum vulgareOryza nivara21.6713.3198.1580forward

Expression of CNT30220010

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLASGGGLSPGSPAASSDSPSRLIFLWLYL*

>peptide 2 (36 aa)
MWLVRAFIRGAACDSAWEKRAELQTFVFRALHCLRE*

>peptide 3 (37 aa)
MWAEPFPSQVVARFGLAWSERDSKSRICAPRIDIYVS*

>peptide 4 (43 aa)
MSFXWKRVGCFLEVRPGFSLKKSKRGGGIDLSNAYSVVPAWPH*

>peptide 5 (51 aa)
MTISLELQGPTHISIVYRGPRPEPHVQVSLHVARPCFYPRRCLRLCMGEEG*

>peptide 6 (68 aa)
MCCVAPTHGHLVRSYGPVVDKPLIGGDWTGVLSSNDACGLSHSHPKWWPDSAWPGRKEILNLEYAHRE*

>peptide 7 (47 aa)
MCCVAPTHGHLVRSYGPVVDKPLIGGDWTGVLSSNDACGLSHSHPKWW

>peptide 8 (50 aa)
MRIGPGSSGPPFIIIYTSCHARSHRNDFIALRSRTRHHLQPFPLPGTFTK*

>peptide 9 (44 aa)
MVPQDPINPLRSTLPRYCSMEAGGLLFRSSARFFIKKIKKGGRD*

>peptide 10 (44 aa)
CSGRHSYVLRMIPTGDYMRGLGNCRDALVTKVTGVTMEGFRGSL*

Sequence

>CNT30220010
ATGTAGTGGTCGGCATTCCTACGTGCTCCGAATGATCCCCACTGGAGATTATATGAGGGGTCTTGGAAACTGTCGTGACGCTTTGGTGACGAAGGTCACC
GGGGTGACTATGGAAGGATTCCGTGGTAGTCTCTGACTCCCTCCAACTCAATCAATATCAAGAACATGTCGTGAGCATGGGGTTTGGTTAGGCTTGGTTG
AGTTTGTAAGAAAAGATAGTAGGTTGAGGGGCTTCATTGATTAGTAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGG
CCGATAAGATCACTGAGATTGACCAGCCAGCTGGGTAGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCTTCCTTAGGC
TCCGAGTCACCTTCTTCTAAGCTCCGCTGGACGACACGGCATTCTCGTTCTATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATCCAATAAATCCACT
TAGGTCTACGTTGCCGCGATATTGTTCTATGGAAGCGGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGG
GATTGACCTTTCTAACGCATATTCTGTCGTACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAA
GCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTCCCCTTTTTGATAACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGANTGGAA
GCGGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGGGATTGACCTTTCTAACGCATATTCTGTCGTACCG
GCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTA
CCCAACTCCCCTTTTTGATAACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCTCTTTTTTTTTCCC
TAAATCTTGGATTTGGAAGTTGGTAAAGACCCACCCCTTGTTTAAGTCAGAATGAGTCCCCGAGACATTGGCTTCCGCCAACAGTGAACTATTAAGGATC
GCATCCCGCGCATATTCTACATTATAGCCTGCAACTAATTCAGCTTCCGCTTCTGGGAGATCAGACGGAGCTCGATTAGTTTCTGCTAGACGAGGAATAA
GGAACATAACCAATACGGGGAACAAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGTAT
AGTATACCGGGGTCCCCGGCCAGAACCACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCGTGCTTTTATCCGAGGCGCTGCCTGCGACTCTGCATGGGA
GAAGAGGGCTGAACTGCAAACTTTCGTGTTCAGAGCATTGCATTGTCTAAGGGAGTAGGGTGAGTAAGCTGCGCCTACCAAGCTAAGCTTTCGTCGAAAA
GGCGTCACTGCTTCCTTTTCGGCGCCCGCCCTTTATTTAGATGTTGGGGCAAGGCAAGCCCAAGGAAAGTCTAGGTTGGCGCTCCATCTCGGCCGGCATC
CTGCTCTCGAGAGGGTGTGGTCCTTGAGCGAACTAGTCATGTGCTGTGTTGCCCCAACGCATGGGCATTTGGTGAGGAGCTACGGTCCGGTGGTTGACAA
GCCACTGATCGGAGGCGACTGGACTGGAGTGCTTTCATCAAATGATGCATGTGGGCTGAGCCATTCCCATCCCAAGTGGTGGCCCGATTCGGCCTGGCCT
GGTCGGAAAGAGATTCTAAATCTCGAATATGCGCACCGAGAATAGATATCTATGTTAGCTAGCGGGGGCGGGCTTTCCCCTGGTAGTCCCGCTGCGTCCT
CTGACAGTCCGTCTCGTCTCATCTTTCTTTGGCTATACTTGTAGCCAGCCATATTAGCTCCACATTCCACCCTTTTGGATTTCTGACGAAAAAGGCAGTC
ATCAGTCGCCCCCTTTCCTATTTAGCTTTGCTTGCTGCCTATTATGAGAATAGGTCCCGGTTCAAGCGGCCCGCCTTTCATCATCATCTATACCAGCTGC
CACGCACGATCCCATAGGAACGATTTCATCGCCCTAAGAAGCAGAACGCGCCATCACCTACAGCCCTTTCCTCTGCCGGGGACTTTCACGAAATGAAAAC
GGGCGGCATCATCGTATGCTCGACATTAGTTNGCATTGTCTAAGGGAGTAGGGTGAGTAAGCTGCGCCTACCAAGCTAAGCTTTCGTCGAAAAGGCGTCA
CTGCTTCCTTTTCGGCGCCCGCCCTTTATTTAGATGTTGGGGCAAGGCAAGCCCAAGGAAAGTCTAGGTTGGCGCTCCATCTCGGCCGGCATCCTGCTCT
CGAGAGGGTGTGGTCCTTGAGCGAACTAGTCATGTGCTGTGTTGCCCCAACGCATGGGCATTTGGTGAGGAGCTACGGTCCGGTGGTTGACAAGCCACTG
ATCGGAGGCGACTGGACTGGAGTGCTTTCATCAAATGATGCATGTGGGCTGAGCCATTCCCATCCCAAGTGGTGGCC