Detailed information on CNT30219859


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674990Hordeum vulgareSetaria viridis51.8132.3392.25129forward
CNT30380328Hordeum vulgareManihot esculenta37.3535.6384.9593forward
CNT30613891Hordeum vulgareArabis alpina39.7624.5783.8499forward
CNT30358481Hordeum vulgareLactuca sativa24.16.5586.6760forward

Expression of CNT30219859

Peptides detected in this lncRNA

>peptide 1 (82 aa)
AASSAPCRRWTSSPSAWCGPCRRCAGRSTREEEVGLEVLGDLADEALEGELADEQLGALLVLADLAERDGAGAEAVGLLDAAG

>peptide 2 (81 aa)
LLPRRLAAGGLPRRLLGAGHVAGARGGRLGRRRSVLKSWAISRTRRWKGSLRMSSSVLFWYLRISRSATVPGRKRWGFLTPP

Sequence

>CNT30219859
GCTGCTTCCTCGGCGCCTTGCCGCCGGTGGACTTCCTCGCCGTCTGCTTGGTGCGGGCCATGTCGCCGGTGCGCGGGGAGGTCGACTAGGGAGGAGGAGG
TCGGTCTTGAAGTCCTGGGCGATCTCGCGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGAGCAGCTCGGTGCTCTTCTGGTACTTGCGGATCTCGCGGA
GCGCGACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTGACGCCGCCGGT