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Detailed information on CNT30219843


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 2e-69

BLAST vs NONCODE:
NONORUT005433, E-value = 6e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Hordeum vulgareOryza sativa49.6565.3783.86285forward
CNT30674998Hordeum vulgareSetaria viridis31.1847.1194.97179forward
CNT30519871Hordeum vulgareSetaria italica60.9852.8795.14350forward
CNT30315797Hordeum vulgareCorylus avellana51.5744.7879.73296forward
CNT3069242Hordeum vulgareQuercus suber40.5943.4784.55233forward
CNT3048083Hordeum vulgarePrunus dulcis56.4546.1579.63324forward
CNT30177168Hordeum vulgareSecale cereale61.1547.2496.87351forward
CNT30283676Hordeum vulgareTriticum aestivum89.0279.2291.98511forward
CNT30398097Hordeum vulgareTriticum turgidum62.0246.5491.85356forward
CNT30591253Hordeum vulgareMusa acuminata21.2539.189.34122forward
CNT3084175Hordeum vulgareVigna radiata40.0722.0780.43230forward
CNT30443502Hordeum vulgareAegilops tauschii54.750.7391.08314forward
CNT30657055Hordeum vulgareTriticum dicoccoides61.1567.1197.72351forward
CNT30259840Hordeum vulgareBrassica rapa26.6652.9486.27153forward
CNT30140729Hordeum vulgareLolium perenne61.8565.7493.8355forward
CNT30686633Hordeum vulgareTriticum urartu17.7736.8298.04102reverse complement
CNT30719851Hordeum vulgareTriticum spelta94.675.6391.34543forward
CNT30368649Hordeum vulgareSorghum bicolor32.7544.7692.02188forward
CNT30596421Hordeum vulgareOryza meridionalis21.0817.2497.52121forward
CNT30358587Hordeum vulgareLactuca sativa23.6924.7780.15136forward
CNT30644610Hordeum vulgareCannabis sativa25.4431.7480.14146forward
CNT30148402Hordeum vulgareBrachypodium distachyon17.9420.9899.03103forward
CNT3099660Hordeum vulgareOryza rufipogon19.6924.9498.23113forward
CNT30585391Hordeum vulgareEchinochloa crusgalli60.9853.7693.71350forward

Expression of CNT30219843

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSNSPTR*

>peptide 2 (33 aa)
NGITNNENQASTGTDLRTDIQHFSFKLPMTTRW*

>peptide 3 (42 aa)
MSSSVLFWYLRISRSATVPGRKRWGFLTPPVAGADLRAALVAS

Sequence

>CNT30219843
AACGGAATAACAAACAATGAAAACCAGGCATCGACAGGCACAGATCTAAGAACAGATATCCAACATTTCTCATTTAAATTACCGATGACAACAAGATGGT
GACACCAGACAGGCACACTACATCCACCATGGCACGAACATAAACTAGCACGCACATTTCCACCGCGGAACAAAGGCTAAGATGATGGACCTAACAAACG
ACCACAGCTTCCAGAGAGCAGCCTAGGCCCTCTCTCCACGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGC
GCAGAGGTTGGTGTCCTCGAACAGCCCGACGAGGTAGGACTCGGCGGCCTCCTGCAGGGCGGAGACGGCGGAGGACTGGAAGCGGAGGTCGGTCTTGAAG
TCCTGGGCGATCTCGCGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGAGCAGCTCGGTGCTCTTCTGGTACTTGCGGATCTCGCGGAGCGCGACGGTGC
CGGGGCGGAAGCGGTGGGGCTTCTTGACGCCGCCGGTGGCCGGGGCGGACTTGCGGGCGGCCTTGGTCGCCAGC