« Back to Hordeum vulgare search


Detailed information on CNT30219730


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30385027Hordeum vulgareTriticum turgidum36.8632.8888.43484forward
CNT30435125Hordeum vulgareAegilops tauschii33.2853.6289.02437forward
CNT30352118Hordeum vulgareEragrostis tef11.523.382.78151forward

Expression of CNT30219730

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KRKVRSVYQIYISTSGQLIIDQPNGSIPGRC*

>peptide 2 (39 aa)
MPIYLCLSTNRLFPLAESQTRVHLCKLSSLQKDLYTCRKS

>peptide 3 (37 aa)
MLLSLVLFPSLLLSSVSFFFFFFFFYFSFRFFYMIVT*

>peptide 4 (49 aa)
MGKMCCSSESEEEAGFSFLGLLVAAVIALVFMLLCTPPKRRSVTIYPCC*

>peptide 5 (40 aa)
MLLRQRLRSPRGSLVCWEKASLFMGGSRPGNGSWFSPVQK*

Sequence

>CNT30219730
ATAAAAGAAAGGTCAGATCTGTTTACCAGATATATATCTCAACATCTGGGCAGTTGATCATCGATCAGCCTAACGGTTCCATCCCAGGCCGGTGTTAGTG
GCCTTGGTGGGTGCGAGCATAGGCTGAGCTGTCTTCAGAGATGGAAGGAGAGCACAGGAGGGTGGCATGAGTGAAGACCTGATAGCGACGCCCCAACAAA
CTGGCCACACCACGGCGCCTTAAAGCCAAGATCATGGCCGTGGTATAAGAAAGAAAGAAAGAAACACGCCACTGCTAGGAAGCGAGCCTCTCTTGGTCTG
ACCACCATTGATCTCCAGCATAGCTAGCTAAGCACCGGGCAGCATGGGGAAGATGTGCTGCAGCAGCGAGTCGGAGGAGGAGGCGGGCTTCAGCTTCCTG
GGGCTCCTCGTCGCGGCCGTCATCGCGTTGGTGTTCATGCTCCTCTGCACCCCACCGAAGCGGCGATCTGTCACCATCTACCCATGCTGCTGAGGCAGAG
GCTGAGGAGTCCCCGCGGATCGCTGGTTTGCTGGGAGAAAGCTTCTTTGTTCATGGGAGGGAGCAGGCCAGGCAATGGCTCCTGGTTTTCTCCGGTTCAG
AAATAATTTCTACTGTACTACTGAATTGTAGGACTCGTCGAAACTGTAAGCCATGTTTTTTATCGGTATAGTATTAGGCTGTCCATCTCCATCTGTGGCC
TGAACTGATACATCTGGGGGAATAGATATCATCAAACTTGTTATGTTGCTTTCACTTGTCCTGTTCCCTTCTCTACTTCTCTCCTCTGTTTCTTTTTTCT
TTTTCTTTTTCTTTTTTTATTTTTCTTTCAGATTCTTTTATATGATCGTAACATAAAATCCCAGAAGATTGACTATCTGTTAGCACAGCCAGGGTGCAAT
TAAATAACAGAAAAGTTCAGTGATATTTTTCTGGTGATCAAGTGGTTGTGTAGTGACTCCAGGAGGATGCACGTCTTAGTGCAAGTTCCTGTAGGAAAGC
ACTAACCAGAAACATGGCTACAAAATAGTTCAAGACTAGACCAAAGATTCTACACTTGTTGGCAGATCTGAAAATTCTACCAGGCAGTCTGAAGAAGACC
ATCATTCAACTGTTTGATTTTCTATTTATCAGTTAGATAATTGTGACTGCATCTTAAGCCGCATCAGGCCGGTAGGTATTGCTTTGCGGTTCATGCCTAT
CTATCTTTGTTTGTCTACTAATAGGCTCTTTCCCCTGGCAGAATCTCAGACTCGAGTACACCTCTGTAAACTCTCCAGTCTCCAGAAGGACCTATATACC
TGCAGAAAGTCAC