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Detailed information on CNT30219690


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 3e-15

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Hordeum vulgareSetaria viridis87.0171.7297.32596reverse complement
CNT30378673Hordeum vulgareArabidopsis thaliana94.3151.895.2646forward
CNT30283003Hordeum vulgareChenopodium quinoa81.6158.5397.14559forward
CNT30162096Hordeum vulgarePistacia vera18.2542.09100125forward
CNT3089926Hordeum vulgareSolanum tuberosum51.2415.8797.44351forward
CNT30543266Hordeum vulgareBrassica napus94.3123.895.05646reverse complement
CNT30437461Hordeum vulgareAegilops tauschii39.4210099.63270forward
CNT30600960Hordeum vulgareFraxinus excelsior25.6919.4984.66176reverse complement
CNT30605073Hordeum vulgareGossypium raimondii94.3142.594.74646forward
CNT30715685Hordeum vulgareMalus domestica golden41.923.5888.5287forward
CNT30346087Hordeum vulgareEragrostis tef94.662.6798.15648reverse complement
CNT30359771Hordeum vulgareLactuca sativa94.3161.8295.51646reverse complement
CNT30331625Hordeum vulgareDioscorea rotundata34.1673.5897.44234reverse complement
CNT30151167Hordeum vulgareBrachypodium distachyon17.3720.38100119forward
CNT3099709Hordeum vulgareOryza rufipogon54.1617.04100371reverse complement
CNT3039925Hordeum vulgareMarchantia polymorpha47.8866.1394.82328reverse complement

Expression of CNT30219690

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTMAARYALLSTDLYSNKDYRPLRVYWYIRQQQQ

>peptide 2 (82 aa)
MCRFPNQKIGEHPFSRSYGVILPSSFDMVLSTRPSILYLFTCVGLGYGQFTGRIALPIRSFFLEVSTVVDYDNSRDRLLRSS*

Sequence

>CNT30219690
ATGTTTGACACTGTGAAACTATAGTCAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCA
TGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCG
TTTACCGGGGCTTCCATTCAAAGCTTATCACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGA
GTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATT
TTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCG
CCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCGTCGTTGACTATGACAACAGTCGCGACCGACTATTAAGATCCTCATGACTATGGCAGCGCGG
TATGCTCTGCTCTCTACCGATCTCTACTCTAATAAAGACTACAGGCCCCTACGGGTATACTGGTATATTCGACAACAACAACAAC