« Back to Populus trichocarpa search


Detailed information on CNT3021969


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-139

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-136

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3032819Populus trichocarpaTheobroma cacao75.3199.3485.26604forward

Expression of CNT3021969

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKGRLLLNVVVGKGTAILKLLASKNKPLLVWWDPLLVLDLG*

>peptide 2 (31 aa)
MVSELSTSRVMVFPVKVLTKICIPPRRRSTK*

>peptide 3 (44 aa)
MPSLSWILAFTLSMVSELSTSKVIVLPVRVLTKICMPPLNRSTK*

Sequence

>CNT3021969
GAGTTCAACAAATTATTAAAAGCAACCATTCAAAGACTGCTACTGAACACACACAAGAACCATAATCCAAAGTAATAGCATATAAACCAAGACATTATCT
TGGACAACATGAACAGCACATCTTAAAAACCACCACGGAGACGAAGGACAAGGTGAAGTGTGGACTCCTTCTGGATATTGTAGTCTGCCAGGGTGCGCCC
ATCTTCCAACTGCTTTCCAGCAAAGATCAACCTTTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCTGAG
CTCTCGACCTCCAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAAATCTGCATTCCTCCACGGAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCT
GAATGTTGTAGTCAGCAAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTT
GGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCCAAGGTGATTGTCTTGCCAGTAAGGGTCTTAACAAAGATCTGCATGCCACCTCTCAATCGG
AGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTG
GTGGGATCCCCTCCTTGTCCTGGATCTTGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCATCTGAACACAAAAAAAAAAAAAAAAAACCA
GA