Detailed information on CNT30219137


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FM19|HIR1_ARATH, E-value = 3e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693652Kalanchoe fedtschenkoiOryza sativa44.6675.0779.92259forward
CNT30521034Kalanchoe fedtschenkoiSetaria italica23.7938.9881.88138forward
CNT30530635Kalanchoe fedtschenkoiEucalyptus grandis44.8337.6381.15260forward
CNT30262753Kalanchoe fedtschenkoiBrassica rapa47.4131.7278.91275forward
CNT30471513Kalanchoe fedtschenkoiSaccharum spontaneum34.3148.381.41199forward
CNT30101718Kalanchoe fedtschenkoiOryza rufipogon38.6238.8980.36224forward

Expression of CNT30219137

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSPTAPGPWGMNTVDDLDEAPISFIVSKY*

>peptide 2 (71 aa)
MSITSLALAPGTLPEKPSTLSLNPSTMAWRWRAMPKPERYLASASPSARLICRVFSASAFSLAASLCLAADN

>peptide 3 (97 aa)
WHILVAFSNHHLWFTIYSSSIYHVVWLTADLITATPPLLRQFFSQPALGGFAPLVTVLPSDSARSVLETRSPGNNELVEALRGSGKQCPRLRLVRGG*

>peptide 4 (73 aa)
LAYFSGILKSSSVVHHLLFIHLSCCMVDGRPNYSDAPIATSILFTTCTWWICPLSYSITFGFCSKCARDKIPG*

Sequence

>CNT30219137
CTGGCATATTTTAGTGGCATTCTCAAATCATCATCTGTGGTTCACCATCTACTCTTCATCCATTTATCATGTTGTATGGTTGACGGCCGACCTAATTACA
GCGACGCCCCCATTGCTACGTCAATTCTTTTCACAACCTGCACTTGGTGGATTTGCCCCCTTAGTTACAGTATTACCTTCGGATTCTGCTCGAAGTGTGC
TAGAGACAAGATCCCCGGGTAATAATGAGCTTGTAGAAGCCCTTCGCGGATCTGGGAAGCAATGTCCCCGACTGCGCCTGGTCCGTGGGGGATGAACACA
GTAGATGATTTGGATGAGGCACCGATCTCCTTCATCGTGTCAAAATACTGAGTGAGTAAAACCATGTCCATCACATCCTTGGCACTAGCTCCAGGCACAT
TACCTGAGAAGCCCAGCACGCTGTCTCTCAACCCATCCACAATGGCCTGGCGCTGGCGAGCAATGCCCAAGCCAGAAAGGTACTTGGCTTCCGCTTCTCC
TTCAGCTCGCTTGATCTGCAGGGTCTTTTCAGCTTCGGCCTTCTCCTTGGCCGCCTCCCTGTGCCTGGCAGCTGACAATG