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Detailed information on CNT3021874


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 2e-98

BLAST vs NONCODE:
NONPOPT002096, E-value = 2e-160

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674634Populus trichocarpaSetaria viridis55.9442.986.5311forward
CNT30728063Populus trichocarpaCorchorus capsularis70.8645.3987.31394forward
CNT3041960Populus trichocarpaChlamydomonas reinhardtii33.6354.8483.42187forward
CNT30368415Populus trichocarpaSorghum bicolor67.2736.3583.96374forward
CNT30330123Populus trichocarpaDioscorea rotundata60.7933.284.91338forward

Expression of CNT3021874

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRLNISWMEVEFPMKVDAIASPIGGISHTLDLTLFGIHSTK*

Sequence

>CNT3021874
ACGCGGAACTTAAAGCGGTAAAAATGTATGAAAAATAGCAGCAGCAGCAGAAGATAGACCTTGCACAACTCATTACATCTAGGCAGCCTCTTCCTCCTCC
TCATCCTCGTACTCAAGTTCTTCATCAACGGTTGCATCCTGGTATTGCTGATATTCAGACACGAGATCATTCATGTTGCTTTCAGCCTCGGTGAACTCCA
TCTCATCCATGCCTTCCCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTGTGAATTGCTCACTCACACGCCTGAACATCTCCTGGATGGA
GGTTGAGTTTCCGATGAAGGTGGATGCCATTGCAAGCCCTATTGGAGGAATATCACACACACTGGACTTGACATTGTTTGGAATCCACTCCACAAAGTAG
GAGGAATTCTTGTTTTGGACATTGATCATCTGTTCATCAACTTCTTTAGTGCTCATCTTACCCCTGAACATGGCAGAGGCAGTCAGATAGCGACCGTGGC
GCGGGTCTGCAGCGCACATCATGTTCTTGGAATCCCACATCTGCTGGGTGAGTTCT