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Detailed information on CNT30218527


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Kalanchoe fedtschenkoiOryza sativa50.323.9198.8749forward
CNT30678576Kalanchoe fedtschenkoiSetaria viridis18.9455.7395.74282forward
CNT30524653Kalanchoe fedtschenkoiSetaria italica21.9627.399.39327reverse complement
CNT30550263Kalanchoe fedtschenkoiIpomoea triloba65.418.4497.95974reverse complement
CNT30632593Kalanchoe fedtschenkoiVigna unguiculata63.7356.2297.15949reverse complement
CNT30504983Kalanchoe fedtschenkoiNicotiana attenuata41.0333.5597.55611reverse complement
CNT30635645Kalanchoe fedtschenkoiCapsicum annuum10.3424.8892.86154reverse complement
CNT30304298Kalanchoe fedtschenkoiTriticum aestivum50.328.3198.66749forward
CNT30221494Kalanchoe fedtschenkoiHordeum vulgare39.0946.8698.63582reverse complement
CNT30400948Kalanchoe fedtschenkoiTriticum turgidum50.329.9698.93749forward
CNT30569653Kalanchoe fedtschenkoiActinidia chinensis18.0740.0997.03269forward
CNT30585815Kalanchoe fedtschenkoiMusa acuminata49.730.4995.95740reverse complement
CNT30234810Kalanchoe fedtschenkoiBrassica oleracea50.4499.2193.74751forward
CNT30147389Kalanchoe fedtschenkoiMedicago truncatula59.595.7898.19886forward
CNT30440683Kalanchoe fedtschenkoiAegilops tauschii36.0655.5999.26537reverse complement
CNT30247816Kalanchoe fedtschenkoiAvena sativa42.8530.5499.22638reverse complement
CNT30662061Kalanchoe fedtschenkoiTriticum dicoccoides50.339.0399.07749forward
CNT3081478Kalanchoe fedtschenkoiBrassica juncea33.3142.8394.15496reverse complement
CNT30143344Kalanchoe fedtschenkoiLolium perenne50.333.4899.2749forward
CNT3016633Kalanchoe fedtschenkoiZea mays51.2439.9397.25763forward
CNT30229838Kalanchoe fedtschenkoiAnanas comosus29.7510098.19443forward
CNT3067373Kalanchoe fedtschenkoiLeersia perrieri18.892.7298.21280reverse complement
CNT30655299Kalanchoe fedtschenkoiRosa chinensis49.9726.2298.92744reverse complement
CNT30203595Kalanchoe fedtschenkoiHelianthus annuus64.6752.5796.16963reverse complement
CNT30683015Kalanchoe fedtschenkoiTriticum urartu49.9775.5398.52744forward
CNT30721611Kalanchoe fedtschenkoiTriticum spelta15.0448.5999.55224forward
CNT30595506Kalanchoe fedtschenkoiOryza meridionalis15.8521.4598.73236forward
CNT30369805Kalanchoe fedtschenkoiOryza glumipatula47.9549.7996.08714reverse complement
CNT30154718Kalanchoe fedtschenkoiPrunus persica44.1994.9594.53658reverse complement
CNT30420891Kalanchoe fedtschenkoiPapaver somniferum23.6413.190.34352forward
CNT3037914Kalanchoe fedtschenkoiCucumis melo27.819.4590.34414reverse complement
CNT30147862Kalanchoe fedtschenkoiBrachypodium distachyon9.6754.7599.31144forward
CNT30104484Kalanchoe fedtschenkoiOryza rufipogon17.7398.8895.83264forward
CNT30575706Kalanchoe fedtschenkoiOryza barthii47.7529.1897.47711reverse complement
CNT30582488Kalanchoe fedtschenkoiEchinochloa crusgalli50.361.799.2749reverse complement
CNT30495774Kalanchoe fedtschenkoiDigitaria exilis12.1645.7199.45181forward
CNT30116696Kalanchoe fedtschenkoiOryza nivara50.318.8998.93749forward
CNT30604605Kalanchoe fedtschenkoiOryza punctata5.7837.2391.8686forward

Expression of CNT30218527

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLIPFAPHAFAPQRR*

>peptide 2 (87 aa)
MLSHPSVGRDPESCLRFWPSFVDLRISPLHTKFHSPLSHSSELVSRAFRQFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 3 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 4 (36 aa)
LRPYSPGGVFHALAGPLIRVDQGRTLIVYGMDYQGI*

Sequence

>CNT30218527
TCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTA
CCAGGGTATCTAATCCCGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCCTTCCTTCGTAGATCTC
CGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCAGTTTTTGGCGACTTTCACTTTCA
ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCT
TCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGC
CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATT
GGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTTAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCA
GATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTCTTCCCACCTCCTTGGCGAGACAAGCTACCTTTAGCTAGGAGCCTCTTTTCCTTAT
GCCCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCCTTCCTTCTGAGCCAGGATCAAACTCTTCTTTTGACTATGATTGGG
CCCTACAGTGGTAGAACCTGGTGAACCGGGCGTACTCCTTCCTAACCTTCTGTGGACCTTTCTTCTCTTATGAAATTGATAGATTTAATACATTCCTTAG
AGTTCGTACCCAGCTTGAGCTCTTGAGAGTTGCCTTTGGCAGCTGTTAAGCCCTCTTCTTCTGCCATGGGTCTTCAGCGGTGGGATGGAGGTAGCTATTA
AGTGCAATAGAAAAAAGCAAACCAACAGCGGGTAAGGAATGCAGAGAAAGGATGGCACTGGCGTAACAACTCTTAGCGGGCTTCTAACTTCCTTAGACTA
ACTGCAAAGTCAAAGCTATCAGCCTTCTTTTTCTCTGTTGCAATGAAGGAGGGCTTAAAAGTATAGTCGTTTCAGACAACGATTTGTATCCCTTAGTGCG
GTCATATTCTTCTTTGCCGGATGTGGGCGATAAGTATTGAACTCTAACAGCCAACGATGGCGTGTAAATGGAAAACATAGTCTGACAAAAGAATATGACT
TTCTTCCTTACCAAGTAAGCAAGTAAACTACCTTCTTTTCAAGAATCAGATGAGTTACCAATCTCAGTTGTCAAATCGGCAAATTCGAC