« Back to Kalanchoe fedtschenkoi search


Detailed information on CNT30218200


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09FT6|CLPP_NANDO, E-value = 8e-76

BLAST vs NONCODE:
NONCSAT000277, E-value = 2e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268958Kalanchoe fedtschenkoiChenopodium quinoa42.1363.9789.45474forward
CNT30504293Kalanchoe fedtschenkoiNicotiana attenuata35.3815.7689.2398forward
CNT3045660Kalanchoe fedtschenkoiPrunus dulcis20.9856.3290.25236forward
CNT30588249Kalanchoe fedtschenkoiMusa acuminata31.2976.0381.25352forward
CNT30173048Kalanchoe fedtschenkoiTrifolium pratense9.3326.7283.81105forward
CNT3060029Kalanchoe fedtschenkoiArabidopsis lyrata42.3135.6687.82476forward
CNT3083483Kalanchoe fedtschenkoiBrassica juncea29.6978.486.23334forward
CNT30598582Kalanchoe fedtschenkoiFraxinus excelsior23.5680.7990.94265forward
CNT30607170Kalanchoe fedtschenkoiGossypium raimondii33.0751.4586.56372forward
CNT30655370Kalanchoe fedtschenkoiRosa chinensis42.6741.0387.71480forward
CNT30154187Kalanchoe fedtschenkoiPrunus persica42.5858.2789.35479forward
CNT3057113Kalanchoe fedtschenkoiAmborella trichopoda27.6410.8386.17311forward

Expression of CNT30218200

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MHIWWHKLHGIINSYSGYYPSTGRVYKYIKLSVTILYSEIYHKTNKLIRELIINLLA*

>peptide 2 (48 aa)
MDHYPGDITYKKISQNGIKRKRLTRKKRTVQASFAYCIRLTTGISYRR*

>peptide 3 (33 aa)
MLLLLKILISYGEGIDFFFSQIKNSLAPSVREC*

>peptide 4 (33 aa)
MMVPLLYIFIPSVIQQSQSFFLIRSNKIRKTFS*

Sequence

>CNT30218200
ACCATTGTGATGGTTTCGCGCAGGTTCAGTAGTTCTTCCGCTTCCAGGATAAATTCTCCCGTTTGGGACTCATAAAAAGAACTCGCAGGTTGATGGATCA
TTACCCTGGTGATATAACATACAAAAAGATTTCGCAGAATGGGATAAAGAGAAAGAGACTAACAAGAAAAAAAAGAACCGTACAGGCATCTTTTGCGTAT
TGCATACGGCTCACGACTGGAATTTCCTATCGAAGATAAAATAGGATTTATCATACCCAGATCGAAAAAAAGATCCAATTACCATCCTTCTTTTTGGAGG
AGTTCAAAATACTATGATGGTTCCGTTGCTTTATATATTTATTCCGTCTGTGATTCAGCAATCCCAAAGTTTCTTTTTGATCCGATCAAATAAAATACGG
AAAACTTTTTCATAACATAAATATAAATATTATTCAGAGCTTTTCGGTGTGAAAAAAAAAGTTTGTGACACTGAGATTCCGCTAGATCAAATCGGAAATA
CTTAGTATTTCATACTACTCTTTCGATACATAATTTAATGTTTTGAGAAAAAAAATTTATCATATCGAATTCGAAGTGCCATGCTATTATTACTCAAGAT
TCTTATTTCATATGGCGAAGGCATAGACTTCTTTTTCTCTCAAATAAAAAACTCATTGGCGCCAAGCGTGAGGGAATGCTAGACGTTTGGTAATTTCTCC
CCCGACCAGGACAAAGGATCCCATTGAAGCGGCTAATCCCATACATATTGTATGCACATCTGGTGGCACAAATTGCATGGTATCATAAACAGCTATTCCG
GGTATTACCCATCCACCGGGAGAGTTTATAAATACATAAAGCTCTCTGTTACGATCCTCTATAGTGAGATATACCATAAGACCAATAAGTTGATTCGAGA
GCTCATTATCAACCTCTTGGCCTAAAAAAAGTAATCTTTCTCGATAAAGTCGGTTGTATATGTCAACCCAAGATGCATCTTCCTCTCCAGGATTTCGAAA
AGGTACTTTTGGAACACCAATAGGCATTAAATGAAAAAAAATGAAGTACTCTATTTTACTTTGATGTGGAAACGTAATAGTGGGTTTAGTTTATTGTCCT
CATAATATTGGTCTTTAGCATATCA