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Detailed information on CNT3021812


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MTJ7|PSBB_OENEH, E-value = 7e-37

BLAST vs NONCODE:
NONSLYT001779, E-value = 8e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586609Populus trichocarpaMusa acuminata20.5221.5892.41158forward
CNT30625292Populus trichocarpaDaucus carota20.9122.4298.14161forward

Expression of CNT3021812

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHKDTRLPSIKDFKIITNLLFLFYCNFWIII*

>peptide 2 (75 aa)
MEVHNSEQRPRFAVPSHEGKGITNIPCLHIGSRTGSEGSKTVNSYRAIELAQPATKAVCVIWTASKRSGSFNTTV*

>peptide 3 (80 aa)
MRYMDSQQTIGIIQYNGMNTIPRQTHGIPPYQRKIDTMYLYCTGKKLCYGPPFFSGLSRKCGQKSIIESDHNNRIDYLHA*

Sequence

>CNT3021812
GTTTTTGGGTAGCTGCCAATCGTATTCCTGAATAGTAGAAGAAAAAAGGAAGGAAAAGGAGGCAATAGAAACCGTCAAATTCTCAAATTATGACGTGCAT
ACTAAATAGGAGCCAACAACAAGATATCTAGGACATAGTGAACAAATAAAAGACATACCAAACACAGAAGAGAATAGGAAGGCTGATCCAAACCCGAGGG
AATCACCAATAGCTTTTGTCTCTGGAGCTTGCATCAGAAAGTAGGCCTACATGGAAGTCCATAATTCAGAACAGAGACCAAGATTTGCAGTTCCGAGTCA
TGAAGGGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCGAGAACGGGGTCAGAAGGATCAAAAACTGTTAATTCATATAGAGCCATCGAGCTG
GCCCAACCAGCAACCAAAGCTGTATGCGTTATATGGACAGCCAGCAAACGATCGGGATCATTCAATACAACGGTATGAACACGATACCAAGGCAAACCCA
TGGAATACCCCCTTATCAACGAAAGATAGACACTATGTACCTTTATTGCACTGGAAAAAAACTATGTTATGGACCTCCCTTTTTTAGTGGATTATCTCGG
AAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACAACCGAATTGATTATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTTCAAA
ATCATCACAAACCTCCTTTTTCTTTTCTATTGCAATTTCTGGATTATTATATGATGATTTTGAATCTTTC