Detailed information on CNT3021790


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38850|MYB5_ARATH, E-value = 7e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380220Populus trichocarpaManihot esculenta30.3719.5684.74308forward
CNT3044623Populus trichocarpaPrunus dulcis28.764.3884.19291forward
CNT30159419Populus trichocarpaPistacia vera28.0130.1585.21284forward
CNT30220903Populus trichocarpaHordeum vulgare4.7323.5389.5848forward
CNT3081824Populus trichocarpaBrassica juncea11.7420.881.51119forward
CNT30608078Populus trichocarpaGossypium raimondii15.5823.8381.65158forward
CNT3031669Populus trichocarpaTheobroma cacao22.0957.7378.57224forward

Expression of CNT3021790

Peptides detected in this lncRNA

>peptide 1 (48 aa)
KVFLIICDHASMESAPNTRFSLKFSSIQRRRHESRFPASSESKCCGSN*

>peptide 2 (60 aa)
MQHGVVFAADSAVVAEVGFLILINNVLEVYSIYRWVQLSFSLPTFFLFSFYICFLSCSNI*

>peptide 3 (59 aa)
MGSWINSLAYQLLTQESMEAENEIFFIIGDLATFNRRAEVVHPAETAALATAEETGFLG*

>peptide 4 (59 aa)
MLAWKALQTPGSLSSSHQSREEDMRVDSQPVPSPNVVAAIETKGSELGGAQFTLGTLRI*

Sequence

>CNT3021790
ACAAAGTGTTCTTGATAATCTGTGACCATGCTAGCATGGAAAGCGCTCCAAACACCAGGTTCTCTCTCAAGTTCTCATCAATCCAGAGAAGAAGACATGA
GAGTAGATTCCCAGCCAGTTCCGAGTCCAAATGTTGTGGCAGCAATTGAAACAAAAGGATCTGAACTGGGTGGTGCACAATTCACATTAGGCACATTAAG
GATTTGATGTTGTTGCAAAGCCTCCTCATTTATGAGTGAATTGAGGAACGAAAACACATCGTCGGTGCCGGAATTGATATCTTGATCAGCTTCTCCAATA
CCAAGACTTTGATCGCCTTTCAAATCCATCCCAGAAGTACCATCATAATTCAGCAAACTTGTATAGCCATGACTTGCAATAAAATGGTCGGCGTGATACT
GATCATCGAGGCGTGCTTGGTGCAGATTCGCCTTCGACAAAGAAGGTTTTGATTGATCAAAAGATTGAGGATTGAGAGGCTTATGGGTTCTTGGATCAAT
TCCCTGGCTTATCAGCTTCTTACTCAGGAGTCGATGGAGGCGGAGAATGAGATCTTCTTCATCATCGGCGATCTGGCCACGTTTAACAGAAGGGCGGAGG
TAGTTCATCCAGCGGAGACGGCAGCTCTTGCCACAGCGGAGGAGACCGGCTTTCTTGGGTAAAGTTCGCCACCGACCTTCACCTTCTTTCTTGATATAGT
TAACAAGGAGTTCATCTTCTTCTGGTGTCCACGGTCCTCTCTTTAACCCTACCTTGATGCAGCATGGGGTGGTCTTTGCTGCTGATTCTGCTGTTGTAGC
TGAAGTTGGCTTTCTCATCTTGATTAATAATGTATTGGAAGTATACTCGATATATCGATGGGTTCAACTAAGCTTTAGCTTACCTACCTTTTTCTTGTTT
TCTTTCTATATTTGTTTTTTGAGTTGTAGTAATATCTAGGATGTTGTATATGTGTATATGTAGAATGTCGTGTGATGATGATATGATGAGCTTGAGGTTT
GATGGATAGAAAGG