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Detailed information on CNT30217674


BLAST search results

BLAST vs Swiss-Prot:
sp|P33623|TBA1_ANEPH, E-value = 7e-61

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678752Kalanchoe fedtschenkoiSetaria viridis47.6223.9885.88170forward
CNT30532757Kalanchoe fedtschenkoiEucalyptus grandis44.2635.9189.24158forward
CNT30727926Kalanchoe fedtschenkoiCorchorus capsularis55.1827.0286.8197forward
CNT30144688Kalanchoe fedtschenkoiMedicago truncatula33.3333.5284.87119forward
CNT30953Kalanchoe fedtschenkoiZea mays50.719.1386.19181forward
CNT30229012Kalanchoe fedtschenkoiAnanas comosus54.6223.5284.1195forward
CNT30204030Kalanchoe fedtschenkoiHelianthus annuus52.9445.5487.3189forward
CNT30684179Kalanchoe fedtschenkoiTriticum urartu50.728.8785.08181forward
CNT30721351Kalanchoe fedtschenkoiTriticum spelta50.727.3485.08181forward
CNT30340361Kalanchoe fedtschenkoiEragrostis tef49.0233.4685.14175forward
CNT30356256Kalanchoe fedtschenkoiLactuca sativa38.3826.4583.21137forward
CNT3052700Kalanchoe fedtschenkoiAmborella trichopoda28.5732.2882.35102forward
CNT30106557Kalanchoe fedtschenkoiOryza longistaminata47.6279.4483.53170forward
CNT3024728Kalanchoe fedtschenkoiPopulus trichocarpa55.1824.2685.28197forward
CNT30148523Kalanchoe fedtschenkoiBrachypodium distachyon33.0518.2986.44118forward

Expression of CNT30217674

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MGPSLSGIRSHQHSRHHQTSVTQSMKKSP

>peptide 2 (41 aa)
MVRLVLIMPTAAFTSLGTTSPRYIRQQAMYFPWRGAQRRCW*

>peptide 3 (42 aa)
MTGAYEESMKWILGYGTKFVWNSVTSTFKAPSNLSDAVNEEIT

>peptide 4 (68 aa)
WLIVDTAFESSGAPVNKLDGALGFDNAHSCVHIFGHNVTAVHQAAGHVFSMARGSKALLVISATDSCS*

Sequence

>CNT30217674
GTGGCTGATAGTTGATACCGCATTTGAATCCAGTGGGGCACCAGTCAACAAATTGGATGGTGCGCTTGGTTTTGATAATGCCCACAGCTGCGTTCACATC
TTTGGGCACAACGTCACCGCGGTACATCAGGCAGCAGGCCATGTATTTTCCATGGCGAGGGGCTCAAAGGCGCTGTTGGTGATCTCGGCCACAGATAGTT
GCTCGTGATAGGCTTTCTCGGCTGAGATGACCGGAGCATATGAGGAAAGCATGAAATGGATCCTGGGGTATGGGACCAAGTTTGTCTGGAATTCGGTCAC
ATCAACATTCAAGGCACCATCAAACCTCAGTGACGCAGTCAATGAAGAAATCACCTG