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Detailed information on CNT30217604


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504332Kalanchoe fedtschenkoiNicotiana attenuata10.6322.1685.5376reverse complement
CNT30713155Kalanchoe fedtschenkoiMalus domestica golden10.6329.9288.1676reverse complement

Expression of CNT30217604

Peptides detected in this lncRNA

>peptide 1 (85 aa)
GLDHSLGLHWLPSTSRWSSEPYHSSTTLREGHLLSINNFNHLISSPFTTFYLPLSRVILFFPFIISSCGFGITMFIMMCVKICDG*

>peptide 2 (77 aa)
LGWTIHWGCTGCPLPAGGHQSHTIQAQLLERAISSASTTSTISSHHHSPPFISPCLELSSSSLLSSPLVDLESLCLL*

>peptide 3 (54 aa)
MSSIARCFMPLLLPFILTKLNLCACAMLKIGHTNRKIRTWAKMGLPIETSFANV*

Sequence

>CNT30217604
CTGGGTTGGACCATTCATTGGGGCTGCACTGGCTGCCCTCTACCAGCAGGTGGTCATCAGAGCCATACCATTCAAGCACAACTCTTAGAGAGGGCCATCT
CCTCAGCATCAACAACTTCAACCATCTCATCTCATCACCATTCACCACCTTTTATCTCCCCTTGTCTAGAGTTATCCTCTTCTTCCCTTTTATCATCTCC
TCTTGTGGATTTGGAATCACTATGTTTATTATGATGTGTGTAAAGATTTGTGATGGCTAATGAGGCTTTTGTTTGTGGCTAGTTTTTATATTACATTTAT
TGAATCAAATACCCTAATCACTAGTTTCAAACTGTAATCGTGAAGATTATCAGTAATTATCTAAATATCATCAGTCTCACTCTCCTTAATTATGAGTAAA
GAATTTCTTAGATTTTATAATGTCATCCATTGCTAGGTGTTTCATGCCCTTATTATTGCCTTTCATTTTAACTAAGCTCAACTTGTGTGCCTGTGCGATG
TTGAAGATTGGCCACACAAACAGAAAGATAAGAACTTGGGCTAAAATGGGGTTGCCAATAGAGACAAGTTTTGCCAATGTGTAGGCCCAAATTTGCTACT
AGATAGAGAAATGCACTAAATGTGATGCACACATTCAAGAAAGATAGAGGATAAGAGAACCAGGACTGTAAGGCTGTGTTTGGTTGAGGGAAAATTGTAG
GGAGAAGAAAATTTG