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Detailed information on CNT3021748


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000030, E-value = 5e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548543Populus trichocarpaIpomoea triloba15.2238.6782.86140forward
CNT30404571Populus trichocarpaBeta vulgaris11.320.7683.65104forward
CNT30559850Populus trichocarpaActinidia chinensis18.3734.1482.25169forward
CNT30571726Populus trichocarpaVitis vinifera20.8740.7689.58192forward
CNT30705729Populus trichocarpaPrunus avium32.1759.9281.76296forward

Expression of CNT3021748

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQSSFSGLRKVSSSMPRCSYHNPKRNPWIWPRAGCLVAK*

>peptide 2 (37 aa)
MALVFLKVHILHFSSPHDSQGRKMSSSSEDLLQAPWL*

>peptide 3 (45 aa)
MDLASCRLSGCQVIWLVSSHGSGFSEGSYSPLFFTSRFPRQKNVK*

Sequence

>CNT3021748
TAATCTGCAAGAACAAAATCTGGCACCATATCAAACATACATCACCCAGTAAATCAAGCTTACAAGTTCAAAACAGTCAGCATTAACATTCACACCATAT
CGTTACATCTCTGTAAATCCCTGATATGAACAATCAGGCAGAAAAAATAAAATAAAATAGCACCCCAGCAGGCTGACACATAACATTATTATTATTCTAC
TACTGGAAATATAAAATCGGAGGAGCAGGGATGGGAGGCATGTAATCAGATTTGGCACCGAGAACACGAGCCTTTGTGTCAGGGAAGTACTCTGTTCCAG
GCAGTTCTGTAACATTTCCTTCGCTGGAAATTCCAATGGGGTAACGGAGCAAATGACCTGGTAGATCACCCTCAAGTGTCTCACTGGAATACAAGTCCCA
GTATTTGTCAGCAATCTGGTTCACCTTCCTAATGCAATCTTCATTTTCTGGTTTAAGGAAGGTGTCATCCAGCATGCCAAGGTGTTCGTACCATAATCCC
AAGCGGAATCCATGGATCTGGCCTCGTGCAGGCTGTCTGGTTGCCAAGTGATATGGCTGGTATCCTCCCATGGCTCTGGTTTTTCTGAAGGTTCATATTC
TCCACTTTTCTTCACCTCACGATTCCCAAGGCAGAAAAATGTCAAGTAGTTCCGAGGATCTTCTTCAAGCCCCTTGGCTCTGAGAGCCTGAATGACATCT
TTATACATCATGTCCATTGTCCTCCTCTGCCAGTCTAATATTGCCTGAACTGATGCACTCTCTGGTATTCCCTCTGGCCACATTGGAACAACAACATAAA
CAGTGAACCTCTCCCCTGCCTCAATCTTGCTAACTATCTTAAGTGAAAGCTCTTTTGGAATTAGATGCAAAGCATTAATGTCCTCCGGCTTAATACCATC
AGCACTCCAGCAAAAAGAAC