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Detailed information on CNT30217467


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 5e-172

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-108

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528694Kalanchoe fedtschenkoiEucalyptus grandis79.7462.1686.42685forward
CNT30165846Kalanchoe fedtschenkoiPistacia vera78.2356.4285.57672forward
CNT30562225Kalanchoe fedtschenkoiActinidia chinensis76.3773.385.37656forward
CNT3074551Kalanchoe fedtschenkoiBrassica juncea79.1675.1485680forward
CNT30260853Kalanchoe fedtschenkoiBrassica rapa79.1675.7284.85680forward
CNT30153569Kalanchoe fedtschenkoiPrunus persica79.0575.2885.86679forward

Expression of CNT30217467

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSRVMVFPVRVFTKICMPPRRRRTRWRVDSF*

>peptide 2 (31 aa)
MVSEDSTSRVMVLPVKVLTKICIPPRRRRTK*

Sequence

>CNT30217467
ACGACACAGACTGACACAAAGAGCAGAGTAGAGTTTAAACTGAAACTGAAGACGAGCACACAGATATAGCAGACCAAATTCAATCCCAAGACAAAAGCAA
CCAACATCATGACATTCAGTTTCCACCACGCAGACGCAGGACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTCCCATCTTCC
AACTGCTTGCCCGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCA
CCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATGCCACCCCGCAGACGGAGGACCAGGTGGAGGGTGGATTCCTTCTGAATGTT
GTAGTCAGCGAGAGTGCGTCCATCCTCAAGTTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGCGGGATTCCCTCCTTATCCTGGATCTTAGCTTTG
ACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATACCACCACGCAGACGGAGGACCA
AGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGAT
CCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTACCGGTCAAAGTCTTCACGAAGATC
TGCATGCCTCCCCTCAATCGGAGCACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTA