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Detailed information on CNT30217218


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670613Kalanchoe fedtschenkoiSetaria viridis18.0824.2384.0494forward
CNT30515079Kalanchoe fedtschenkoiJuglans regia26.5426.9585.51138forward
CNT30302990Kalanchoe fedtschenkoiTriticum aestivum14.2326.0685.1474forward
CNT309074Kalanchoe fedtschenkoiZea mays18.2732.9984.2195forward
CNT30595676Kalanchoe fedtschenkoiOryza meridionalis19.232582100forward

Expression of CNT30217218

Peptides detected in this lncRNA

>peptide 1 (32 aa)
IYIQTISIHHRPGHFFYYHHPYIYFKSPEPAT*

>peptide 2 (45 aa)
YIYKPYPSITDRVTSFITTTHTYTSNLQNQPLSASLLQPKPCLPI*

>peptide 3 (67 aa)
MYSPAVAHWVTILTHTDGHPTSTSFPLSPTEGYLVGKEEWSMTQHEQQSIQLIKQLWPDPMQESLWK*

>peptide 4 (83 aa)
IYTNHIHPSPTGSLLLLPPPIHILQISRTSHLAPLFFNPNPASLFNHHMCHYNTLGQVPGFQLSYFSELPIRENNWGNQRPYV*

Sequence

>CNT30217218
ATATATATACAAACCATATCCATCCATCACCGACCGGGTCACTTCTTTTATTACCACCACCCATACATATACTTCAAATCTCCAGAACCAGCCACTTAGC
GCCTCTCTTCTTCAACCCAAACCCTGCCTCCCTATTTAACCATCACATGTGTCACTACAACACATTAGGGCAAGTCCCAGGGTTTCAACTGTCTTACTTT
TCAGAACTCCCTATCCGGGAAAATAATTGGGGCAACCAAAGACCATATGTATAGCCCTGCAGTAGCCCACTGGGTCACAATCCTCACCCACACCGACGGC
CACCCAACATCTACCAGCTTCCCGCTCTCCCCAACTGAGGGCTACTTGGTGGGGAAAGAAGAGTGGTCGATGACCCAGCACGAACAGCAGAGTATACAAC
TGATAAAACAGTTGTGGCCAGACCCAATGCAAGAGAGCCTGTGGAAATAGCCCTAGAATGTTTATGGAGTCCATTGCATTCATAGTCCCTTGGTTCACTT
GCGAGACCACCGTAGCAAAG