Detailed information on CNT3021701


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30491922Populus trichocarpaOlea europaea12.3555.8683.95162forward
CNT3047375Populus trichocarpaPrunus dulcis6.5527.8393.0286forward
CNT3068316Populus trichocarpaLeersia perrieri14.2532.382.89187forward
CNT30414626Populus trichocarpaPapaver somniferum17.4552.0589.96229forward
CNT30110673Populus trichocarpaOryza longistaminata11.2854.6185.14148forward
CNT3039143Populus trichocarpaCucumis melo18.922.390.73248forward

Expression of CNT3021701

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRYMDSQQTIGIIQYNGMNTIPRQTHGIPPYQRKIDTMYLYCTGKKLCY

>peptide 2 (56 aa)
MSDSCFAYRIPSRVSQQHQKGTQCCKISWPVKFNRPITDPINSRHTTDLEKVSNFF*

>peptide 3 (35 aa)
MFALRPHLITVTIECIEYSAESNLNMALIENSYCA*

>peptide 4 (43 aa)
MIHSNTKDYKSLNERQLFCIQNPIKSVAATPKRYSMLQDFLAS*

>peptide 5 (89 aa)
MYNTYIINWVVNFGSAVHNSEQRPRFAVPSHEGKGITNIPCLHIGSRTGSEGSKTVNSYRAIELAQPATKAVCVIWTASKRSGSFNTTV*

Sequence

>CNT3021701
GAAGAGAATAGGAAGGCTGATCCAAACCCGAGGGAATCACCAATAGCTTTTGTCTCTGGAGCTTGCATCAGAAAGTAGGCCTACATGGAAGAATCAAAAG
CAGAAATAAAATCCAACTCTGCAAAGCTATAACAGCAACAACATATGCACTCAAATAGACACAAGGTATGTTTGCACTACGACCTCATTTGATAACAGTG
ACCATAGAATGCATCGAATATTCTGCGGAATCAAATCTGAATATGGCACTTATAGAGAATAGCTACTGTGCTTGAACTGCTCCCAGCTCTAGCAGTCAAA
TGATCCATTCTAATACTAAAGATTATAAATCATTGAATGAGCGACAGTTGTTTTGCATACAGAATCCCATCAAGAGTGTCGCAGCAACACCAAAAAGGTA
CTCAATGCTGCAAGATTTCTTGGCCAGTTAAATTCAACAGACCAATCACTGACCCCATCAACTCCAGACACACTACTGATTTGGAGAAAGTTTCCAACTT
CTTTTGATTAGCATGTGAGCCCATACAAGTTTAGACCAATCTAATACTTTTCCATTCATCTTCATTAACATCCCTCAAGAACAATTGCAGAAAACTTCCC
ATCTCAAGTTGATTAATATTTGATGATTCCATATACAGTCCATTATGTTTCAACCAAGTTCTCAGATTTGGCAGGAAGATAGTTTGAATTCATAGTTACC
TAGAACTTGGTACATTGTGGGTTGTAGTATGATTACAGGGGACAGTACACACCACTTAGCATCGTAGGTTTAGCATGGAGGGAAGGCTTAGTTGGTTCAG
TATCTGAAATGGTGGTATCTTTAGAGTGCTCATTTGGGTCGCTTATTGTTTTTTATCCGTGAAATCAATAAGATGCCCCTAGAAAGGCAAGTAAAACTAT
AAAAGAAGCATCCATTCTTCTTTCCTTCATCCAACACCTTCTTTGGGCATGTATAACACCTATATTATAAATTGGGTGGTCAATTTTGGCAGTGCAGTCC
ATAATTCAGAACAGAGACCAAGATTTGCAGTTCCGAGTCATGAAGGGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCGAGAACGGGGTCAGA
AGGATCAAAAACTGTTAATTCATATAGAGCCATCGAGCTGGCCCAACCAGCAACCAAAGCTGTATGCGTTATATGGACAGCCAGCAAACGATCGGGATCA
TTCAATACAACGGTATGAACACGATACCAAGGCAAACCCATGGAATACCCCCTTATCAACGAAAGATAGACACTATGTACCTTTATTGCACTGGAAAAAA
ACTATGTTATGG