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Detailed information on CNT3021694


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-159

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547563Populus trichocarpaIpomoea triloba69.0496.9683.71669forward
CNT30525954Populus trichocarpaPhaseolus vulgaris71.5263.1783.69693forward
CNT3087979Populus trichocarpaVigna radiata71.6273.7584.01694forward
CNT30172216Populus trichocarpaTrifolium pratense69.7639.6784.76676forward
CNT3073349Populus trichocarpaBrassica juncea70.5961.5184.94684forward
CNT30260853Populus trichocarpaBrassica rapa71.3176.9583.79691forward

Expression of CNT3021694

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVFPVKVLTKICIPPRRRSTK*

>peptide 2 (32 aa)
HNKRSIYCIKNLICIDIKACNGMALNSHSKQY*

>peptide 3 (44 aa)
MPSLSWILAFTLSMVSELSTSKVIVLPVRVLTKICMPPLNRSTK*

>peptide 4 (77 aa)
MKGRLLLNVVVGKGTAILKLLASKNKPLLVWWDPLLVLDLGLYIINSVRAFHLKGDGLASESLDEDLHLNTKKKKKNQ

Sequence

>CNT3021694
TGCACAACAAAAGGAGCATATATTGCATAAAAAATCTTATTTGCATAGATATTAAGGCTTGCAATGGAATGGCCCTTAACAGCCACTCCAAACAGTACTA
GGTGAACAAGAACAGATAATTTAAACGAGTTCAACAAATTATTAAAAGCAACCATTCAAAGACTGCTACTGAACACACACAAGAACCATAATCCAAAGTA
ATAGCATATAAACCAAGACATTATCTTGGACAACATGAACAGCACATCTTAAAAACCACCACGGAGACGAAGGACAAGGTGAAGTGTGGACTCCTTCTGG
ATATTGTAGTCTGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTTTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTGG
CCTTCACGTTGTCAATGGTGTCTGAGCTCTCGACCTCCAGAGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAAATCTGCATTCCTCCACGGAGACGCAG
CACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGG
GGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCCAAGGTGATTGTCTTGCCAGTAAGGGTCTTAACAA
AGATCTGCATGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCC
AGCAAAAATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCCACCTCAAGGGTG
ATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCATCTGAACACAAAAAAAAAAAAAAAAAACCAGA