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Detailed information on CNT3021633


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30542027Citrullus lanatusBrassica napus20.9323.4586.1172reverse complement
CNT30236753Citrullus lanatusBrassica oleracea20.9323.4586.1172reverse complement
CNT30262508Citrullus lanatusBrassica rapa20.6423.0585.9271reverse complement

Expression of CNT3021633

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MQGPTPFLEWASKWTSSKSQPNRKDKLPTTSEPPHRLQAFVTWLG

>peptide 2 (59 aa)
RASIRNHKKKNIQRKRWLSGLEHPKRQYWAFKNLLVIRPLMRARGDAALLCQPHAVSSI*

>peptide 3 (64 aa)
MPASRSFLNLKAVHFGLSSRCKAQLPSWNGQASGPHPSPNQIGRTNFQPPQSPHIGYKPLLLGSA

Sequence

>CNT3021633
CGTGCTTCGATTAGAAACCACAAAAAAAAAAACATTCAAAGAAAAAGGTGGTTGTCAGGTTTAGAACATCCCAAGAGGCAATATTGGGCCTTTAAGAACT
TGCTCGTGATCCGTCCACTGATGAGAGCAAGAGGTGACGCTGCTCTGTTATGCCAGCCTCACGCAGTTTCCTCAATCTAAAGGCAGTGCACTTTGGTCTT
TCGTCCAGATGCAAGGCCCAACTCCCTTCTTGGAATGGGCAAGCAAGTGGACCTCATCCAAGTCCCAACCAAATAGGAAGGACAAACTTCCAACCACCTC
AGAGCCCCCACATAGGTTACAAGCCTTTGTTACTTGGCTCGGCG