« Back to Citrullus lanatus search


Detailed information on CNT3021623


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 1e-87

BLAST vs NONCODE:
NONMTRT001761, E-value = 1e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673197Citrullus lanatusSetaria viridis8.2521.2585.71112forward
CNT30533956Citrullus lanatusEucalyptus grandis32.3362.8978.36439forward
CNT30516978Citrullus lanatusJuglans regia23.0545.8978.91313forward
CNT30698134Citrullus lanatusQuercus lobata30.8522.4879419forward
CNT30730016Citrullus lanatusCorchorus capsularis15.1731.1282.52206forward
CNT30629841Citrullus lanatusVigna unguiculata11.6327.0182.91158forward
CNT30507460Citrullus lanatusNicotiana attenuata14.3664.3680.51195forward
CNT30710020Citrullus lanatusGlycine max13.9941.3982.11190forward
CNT3042792Citrullus lanatusPrunus dulcis7.5127.6485.29102forward
CNT30635301Citrullus lanatusCapsicum annuum16.6456.9378.76226forward
CNT3094368Citrullus lanatusSolanum tuberosum10.0952.981.75137forward
CNT30292923Citrullus lanatusTriticum aestivum7.2242.9882.6598forward
CNT30564216Citrullus lanatusActinidia chinensis7.7347.0984.76105forward
CNT3084712Citrullus lanatusVigna radiata10.952.379.73148forward
CNT30172563Citrullus lanatusTrifolium pratense14.0628.1381.15191forward
CNT3075006Citrullus lanatusBrassica juncea9.227.7883.2125forward
CNT30454500Citrullus lanatusSaccharum spontaneum8.2530.9485.71112forward
CNT304795Citrullus lanatusZea mays8.2524.7885.71112forward
CNT30610860Citrullus lanatusGossypium raimondii5.0123.0588.2468forward
CNT30129085Citrullus lanatusCorymbia citriodora22.929.5379.42311forward
CNT30344813Citrullus lanatusEragrostis tef8.2521.4184.82112forward
CNT30620323Citrullus lanatusCajanus cajan28.6521.7778.92389forward
CNT30154501Citrullus lanatusPrunus persica10.9747.7683.89149forward
CNT30644515Citrullus lanatusCannabis sativa27.4764.5379.36373forward
CNT3031830Citrullus lanatusTheobroma cacao11.4942.7484.62156forward
CNT3037832Citrullus lanatusCucumis melo30.6349.4194.47416forward
CNT30104607Citrullus lanatusOryza rufipogon8.0330.3682.57109forward
CNT30578384Citrullus lanatusOryza barthii5.8920.418580forward
CNT30582394Citrullus lanatusEchinochloa crusgalli8.2530.0384.82112forward
CNT30557050Citrullus lanatusPanicum hallii8.2529.4786.61112forward
CNT30725036Citrullus lanatusLupinus angustifolius14.2129.9782.9193forward
CNT3049017Citrullus lanatusCucumis sativus31.1543.1293.14423forward

Expression of CNT3021623

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MCIRTSLESIAYRNAPTHSKNQCVTEAIVCEANGRRVHT*

>peptide 2 (48 aa)
MRRSGEAERPLGEIKALVLDEAKLELSWLAMGEVAVAMAAAFASAAFG*

>peptide 3 (40 aa)
MLPHIVRINVSQKLLFVKQMEGGYIHNSSKREINMQSQRI*

>peptide 4 (52 aa)
MEVALQKQKMIQNLLDVVWEVQDIEEEVCPDHTRDPAEEEPTGEFCPPVGCL*

>peptide 5 (51 aa)
MGGPRHRGGSMPRSHQRSRRRRTHRRILPTRRLFVADQGSSFGQSRSTMVR*

>peptide 6 (32 aa)
MNGSPLIGWITWDASERRSGETFGRDQSSGVG*

Sequence

>CNT3021623
AATTGCTTATAACGGTGAACTTCACAACTTACATGCATGAACTGAAGGGTAGGGTTGAAGTAAGTTCTGCCGTAGTTCAACCCATATGATTGGAACTCCA
TGAACGTGATTGAAAATTTATGTAAATGAATGAGCCAGGGACTACCTGGTGAAGTAAATCACAACCTTTACCACTTGATTTTCCATTTGGAAAGGATGGT
GAACTGAAGATACCATGCTCTGACACCCAATGGCTCAGTCTTACCACCACCTCAATAACAGAGTTTCAGAAAGGCAAGATGTTTAATCATATTGATGTGT
ATCCGGACGAGTCTGGAGAGTATTGCTTACAGAAATGCTCCCACACATAGTAAGAATCAATGTGTCACAGAAGCTATTGTTTGTGAAGCAAATGGAAGGA
GGGTACATACATAACAGTTCCAAAAGGGAAATCAATATGCAATCACAAAGGATCTAACAAAGAGGTTTGGCAGAAAATATACAATTTTATGTTTCCTTAA
CACAGACATGGAAGTTGCATTGCAGAAACAGAAAATGATACAAAATCTACTTGACGTAGTATGGGAGGTCCAAGACATAGAGGAGGAAGTATGCCCAGAT
CACACCAGAGATCCCGCCGAAGAAGAACCCACCGGAGAATTTTGCCCACCCGTCGGCTGTTTGTAGCGGATCAGGGGTCTTCTTTCGGCCAGTCAAGGTC
AACGATGGTGCGGTAGATGGTTCTCCTTCATTGAAGGATGCAACACCATACATTGTCAAGCAGATGCTCAAAATGACAATGAGACCGCCAGCGGCCAGTG
AGCCGGCTCCTCCGGCGTAGGCTGTGTTCCTTAGAGGGCCAGCTTTGACAAATGGGCCAACCAGAAAAAAACCGTGGGCCAGGCCCACTTCAATTCCCCT
CAGCAATGGGCTAACTGCTGTTCTGTAGGCTGGGAGGTTTGATAGGTACCATGCTATCAGTGGGCTTGAGGTGACTGGAGTCTCGAGGCTTCCAATGAAT
GGGTCTCCATTGATTGGCTGGATCACTTGGGATGCGTCGGAGCGGCGAAGCGGAGAGACCTTTGGGAGAGATCAAAGCTCTGGTGTTGGATGAAGCGAAG
CTCGAACTGAGCTGGCTGGCAATGGGGGAGGTTGCAGTGGCCATGGCTGCTGCTTTTGCTTCTGCTGCCTTTGGCTAGTGAAAGGATCAGTGGCAAAGAA
GAATGAGGTGAGATTTTTAGATTTGGTTTTCGGGGTTAGTTTAAGTTTTTGTTGTTGGTGGTCATTGGCCATGGAAATTTGTGGGAGGCTGTGGTTGATC
AAACCTCCCTCTTCTCATTGGATGGAACTTGCCACATAACCTTATCCCTTATCCATTT