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Detailed information on CNT3021611


BLAST search results

BLAST vs Swiss-Prot:
sp|P48350|CATA1_CUCPE, E-value = 4e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Citrullus lanatusNymphaea colorata43.5820.0979.77173forward
CNT30516669Citrullus lanatusJuglans regia92.1939.5285.79366forward
CNT30501026Citrullus lanatusCoffea canephora53.914.0181.78214forward
CNT30616919Citrullus lanatusSesamum indicum40.0549.2382.39159forward
CNT30282683Citrullus lanatusChenopodium quinoa88.9238.3383.29353forward
CNT3070085Citrullus lanatusQuercus suber56.4234.3683.48224forward
CNT30381388Citrullus lanatusManihot esculenta55.6737.9179.19221forward
CNT30405510Citrullus lanatusBeta vulgaris22.9219.3686.8191forward
CNT30526368Citrullus lanatusPhaseolus vulgaris45.8411.4384.62182forward
CNT30708912Citrullus lanatusGlycine max48.1121.9385.34191forward
CNT3046375Citrullus lanatusPrunus dulcis92.1952.4486.07366forward
CNT30168584Citrullus lanatusPistacia vera19.428.4189.6177forward
CNT30638211Citrullus lanatusCapsicum annuum50.1335.6683.92199forward
CNT3098566Citrullus lanatusSolanum tuberosum26.230.5985.58104forward
CNT30305192Citrullus lanatusTriticum aestivum36.7826.9485.62146forward
CNT30563752Citrullus lanatusActinidia chinensis55.4245.1785.91220forward
CNT3085325Citrullus lanatusVigna radiata86.1548.3785.09342forward
CNT30668803Citrullus lanatusTriticum dicoccoides76.8339.6681.64305forward
CNT30313019Citrullus lanatusCamelina sativa68.5144.4479.04272forward
CNT3080335Citrullus lanatusBrassica juncea43.5830.5182.66173forward
CNT30263082Citrullus lanatusBrassica rapa61.2172.5481.89243forward
CNT30475173Citrullus lanatusSaccharum spontaneum84.6345.2282.14336forward
CNT30654455Citrullus lanatusRosa chinensis46.640.4884.86185forward
CNT30715065Citrullus lanatusMalus domestica golden92.1925.7485.25366forward
CNT30624536Citrullus lanatusDaucus carota79.3522.4284.44315forward
CNT30478285Citrullus lanatusArabidopsis halleri36.0241.3381.12143forward
CNT30368538Citrullus lanatusSorghum bicolor38.0425.1784.11151forward
CNT30370393Citrullus lanatusOryza glumipatula28.2147.6687.5112forward
CNT30154060Citrullus lanatusPrunus persica74.5629.4884.8296forward
CNT30574555Citrullus lanatusVitis vinifera23.1711.1285.8792forward
CNT30704833Citrullus lanatusPrunus avium92.1951.2684.97366forward
CNT3038372Citrullus lanatusCucumis melo89.1732.1893.5354forward
CNT30576697Citrullus lanatusOryza barthii36.2733.1886.81144forward
CNT3050211Citrullus lanatusCucumis sativus88.4193.3594.02351forward

Expression of CNT3021611

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MAGQKASCSFSAKKLSIFLFKTMRPTGCKGKISSGQVLVTSRGSKSYLSS*

>peptide 2 (45 aa)
KGKISSGQVLGAANSLVQDGASEYQHRRRSWSEAICHLNSRLQEL*

>peptide 3 (38 aa)
ARARYPRARSWELQIVWSKTVPLSISIGEDPGLKQFVI*

Sequence

>CNT3021611
GCAAGGGCAAGATATCCTCGGGCCAGGTCTTGGGAGCTGCAAATAGTTTGGTCCAAGACGGTGCCTCTGAGTATCAGCATAGGAGAAGATCCTGGTCTGA
AGCAATTTGTCATCTGAATAGTAGACTCCAGGAACTATAATGGCAGGACAAAAAGCCAGTTGTTCATTCTCTGCAAAGAAGTTATCAATATTCTTATTCA
AAACCATGCGACCAACTGGCTGCAAGGGCAAGATATCCTCGGGCCAGGTCTTGGTTACATCTAGAGGGTCGAAGTCATATCTATCTTCATGATCAGGGTC
AATAGTCTGAATGAAAAGCTTCCACTCAGGGTAGTTGCCAGCTGCAATTGAATCATAGAGGTCCTGAGTAGCATGGCTATGGTTACTTCCTCCAACG