Detailed information on CNT30216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677444Zea maysSetaria viridis67.2164.4993.24207forward
CNT30639474Zea maysNymphaea colorata98.0548.0980.79302forward
CNT30500458Zea maysCoffea canephora46.125.3180.28142forward
CNT30270249Zea maysChenopodium quinoa69.8110.7579.53215forward
CNT30493203Zea maysOlea europaea21.4316.9787.8866forward
CNT30287901Zea maysTriticum aestivum44.1651.3289.71136forward
CNT30393905Zea maysTriticum turgidum30.5228.9287.2394forward
CNT30144912Zea maysMedicago truncatula62.017179.06191forward
CNT30608876Zea maysGossypium raimondii39.6122.7281.97122forward
CNT30229741Zea maysAnanas comosus26.6214.2984.1582forward
CNT30689838Zea maysTriticum urartu29.5530.5489.0191forward
CNT30362547Zea maysSorghum bicolor32.1420.3788.8999forward
CNT3026929Zea maysPopulus trichocarpa46.125.4580.99142forward
CNT30102429Zea maysOryza rufipogon30.5213.2290.4394forward
CNT30112612Zea maysFicus carica29.229.8685.5690forward

Expression of CNT30216

Peptides detected in this lncRNA

>peptide 1 (79 aa)
RVVNGSIRTHIREKIDARRIAQTTTMVDDQNSGWWDQKRCPLEHVELGKITFFVSGLRGDSEARVDTSKHLQETLEDGK*

Sequence

>CNT30216
CGGGTGGTGAATGGATCGATACGAACCCACATCAGGGAAAAGATCGACGCAAGGAGGATAGCCCAGACAACGACAATGGTTGATGATCAAAATAGTGGTT
GGTGGGATCAGAAGCGTTGTCCACTTGAACATGTAGAGCTCGGCAAAATCACCTTCTTCGTCAGTGGCCTTAGAGGTGACAGTGAAGCTCGTGTCGATAC
CAGCAAGCACCTTCAGGAGACCCTGGAAGACGGCAAATAAATGCGCAGAAATACCACCAATGACCCAGAACTGCTCGTTCCTCCACCATTCATCAATGCC
AACACCAC