Detailed information on CNT30215771


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020362Helianthus annuusCitrullus lanatus31.984.7487.33150reverse complement
CNT30553653Helianthus annuusOryza glaberrima36.678.8497.67172forward
CNT30147862Helianthus annuusBrachypodium distachyon30.754.7599.31144reverse complement

Expression of CNT30215771

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQVERCFRGAGQKEKRLLAKGSLSRPGGEKS*

>peptide 2 (39 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKTGTC*

>peptide 3 (34 aa)
ELDPGSEGTLAICLTHASRTLFSGSWAEGKEAPS*

>peptide 4 (30 aa)
MGEDRYVLAKKGSGKGLKRRRKKRKLVHRVF

Sequence

>CNT30215771
GAGCTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTA
GCTAAAGGTAGCTTGTCTCGCCCAGGAGGTGAGAAGAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAA
ATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTT
TTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCGCGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAGACAGGTACGTGCTA
GCAAAGAAGGGAAGTGGCAAGGGATTGAAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGAGTCTTC