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Detailed information on CNT30214788


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529029Helianthus annuusEucalyptus grandis86.5213.4886.96276forward
CNT30549732Helianthus annuusIpomoea triloba22.2619.0390.1471reverse complement
CNT30618959Helianthus annuusSesamum indicum67.083.490.65214forward
CNT30632355Helianthus annuusVigna unguiculata43.8916.1382.86140forward
CNT30202139Helianthus annuusPisum sativum21.635.7592.7569forward
CNT3047566Helianthus annuusPrunus dulcis89.3414.7788.07285forward
CNT30390237Helianthus annuusTriticum turgidum46.086.882.31147forward
CNT30565065Helianthus annuusActinidia chinensis73.674.3591.06235forward
CNT30588787Helianthus annuusMusa acuminata94.9847.4982.51303reverse complement
CNT30237795Helianthus annuusBrassica oleracea45.773.8187.67146forward
CNT30510815Helianthus annuusSolanum lycopersicum31.9721.3884.31102forward
CNT30655383Helianthus annuusRosa chinensis87.467.7987.81279forward
CNT30689226Helianthus annuusTriticum urartu46.718.0483.22149forward
CNT30359977Helianthus annuusLactuca sativa100.6317.9895.33321forward
CNT3057361Helianthus annuusAmborella trichopoda45.142.8689.58144forward
CNT30558183Helianthus annuusPanicum hallii18.1822.3991.3858reverse complement

Expression of CNT30214788

Peptides detected in this lncRNA

>peptide 1 (37 aa)
PLLNTLVDRLYYISRFLTFVSHHDISKQFLLYRPKPR*

Sequence

>CNT30214788
CCGCTGCTCAATACCTTAGTGGATCGACTCTATTACATAAGTAGATTCCTAACGTTTGTCTCACATCATGACATAAGTAAGCAGTTCTTATTGTATCGGC
CAAAACCTCGCTAATTGATCTTTACGGTGCTTACTCTATCAATTAGATCCTTTACCCATAGACTAAAATAGCTAGGCATATCTATTTATTCATATTTCAA
CTTCTATGAAGTTTCTTTCTTTTCTACAGCTAATAAAAATCGTTGTTTAAGACGATGCATATGTAGAAAGCCCTTTTTCTAGTATTTACTAGCGAATTTG
ATCTTTCTTTACTTTTTTC