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Detailed information on CNT3021444


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4VZI2|PSAI_CUCSA, E-value = 5e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3047368Citrullus lanatusPrunus dulcis29.2616.5586.89122forward
CNT30598581Citrullus lanatusFraxinus excelsior26.8631.7387.5112reverse complement
CNT30605440Citrullus lanatusGossypium raimondii31.1831.7890.77130reverse complement
CNT30359652Citrullus lanatusLactuca sativa23.2613.7687.6397reverse complement
CNT30152456Citrullus lanatusPrunus persica31.8927.6587.97133reverse complement
CNT3058321Citrullus lanatusAmborella trichopoda26.6214.1690.09111reverse complement
CNT30149719Citrullus lanatusBrachypodium distachyon13.4324.5691.0756forward
CNT30117629Citrullus lanatusOryza nivara19.1821.3391.2580reverse complement

Expression of CNT3021444

Peptides detected in this lncRNA

>peptide 1 (33 aa)
AIAIAGNTRPTKGTKIEGKVVVRVVIEWMDTST*

>peptide 2 (37 aa)
MQIISKYQNFPLYTFRKVKEALGKRKLCMNVTLTTSL*

Sequence

>CNT3021444
AAGCCATTGCAATTGCCGGAAATACTAGGCCCACTAAAGGCACAAAAATAGAGGGTAAGGTGGTGGTGAGAGTTGTCATAGAATGGATGGATACCTCGAC
TTAATATTTGTACCTATTATTTATTGTTATATTCTTCACTTCAGCATTTATTAAGTAAAATTCTCATTTACATGGTCTCATAACCAATCATTCATGATTG
GCCAAATCATTGATGCAAATAATATCCAAATACCAAAATTTTCCCCTATATACCTTCCGTAAAGTAAAAGAAGCTCTTGGGAAGAGGAAGTTATGCATGA
ACGTAACGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAAGTTCCATCTATCAATGGATAAGACTTCTGTCTTAGTGTATACGAGTTCTTGAAAGTA
AAGGAGCAATAACCAAT