« Back to Citrullus lanatus search


Detailed information on CNT3021394


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4VZP5|ATPI_CUCSA, E-value = 2e-131

BLAST vs NONCODE:
NONATHT002192, E-value = 8e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Citrullus lanatusOryza sativa98.8810.9690.32620forward
CNT30317837Citrullus lanatusCorylus avellana57.4234.2294.44360forward
CNT30703171Citrullus lanatusQuercus lobata1005.2695.22627forward
CNT30617713Citrullus lanatusSesamum indicum60.1319.2392.84377forward
CNT30198301Citrullus lanatusPisum sativum87.5626.4192.53549forward
CNT30486613Citrullus lanatusOlea europaea11.9624.048875forward
CNT30505351Citrullus lanatusNicotiana attenuata98.8817.8493.39620forward
CNT30291829Citrullus lanatusTriticum aestivum98.8815.7389.52620forward
CNT30226738Citrullus lanatusHordeum vulgare54.5526.2388.89342forward
CNT30541450Citrullus lanatusBrassica napus98.5621.9991.26618forward
CNT30238613Citrullus lanatusBrassica oleracea35.0942.3985.91220forward
CNT30511101Citrullus lanatusSolanum lycopersicum98.2550.4589.29616forward
CNT30172770Citrullus lanatusTrifolium pratense78.9597.0688.69495forward
CNT3017990Citrullus lanatusZea mays98.8818.7490.48620forward
CNT30232563Citrullus lanatusAnanas comosus10018.391.71627forward
CNT30626489Citrullus lanatusDaucus carota33.1723.7296.63208forward
CNT3057337Citrullus lanatusAmborella trichopoda99.3616.7286.2623forward
CNT30726491Citrullus lanatusLupinus angustifolius98.8853.2292.58620forward

Expression of CNT3021394

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIFQGKRAPDQFETKINRNIVPIKGTHGPYSSPI*

Sequence

>CNT3021394
AAACTAATCAATGATGACCCTCCATGGATTCGCCTATATAAGCTGCAGCTAAAGTTGCAAAAATCAGAGCTTGAATACCACTTGTAAATAATCCAAGGAA
CATAACAGGTATAGGAACTACTAAAGGTACTAAAGAAACAAGAACAACAACTACTAATTCATCAGCTAATATATTTCCGAAAAGTCGAAAACTAAGTGAT
AAGGGTTTTGTGAAATCTTCTAAGATGTTAATGGGTAAAAGGATTGGAGTTGGTTGAATGTATTTACCGAAATAACTTAATCCTTTTTTGCTAAGACCCG
CATAGAAATATGCTACTGATGTGAGTAAAGCTAAAGCAACAGTAGTATTTATATCATTTGTGGGTGCGGCTAACTCTCCGTGAGGTAACTGTATGATTTT
CCAAGGTAAAAGAGCCCCTGACCAATTCGAAACAAAAATAAATAGAAACATAGTTCCAATAAAGGGAACCCATGGACCATATTCTTCGCCAATCTGAGTT
TTGCTCACGTCTCGAATGAATTCAAGGACATATTCGAAGAAATTCTGACCGTCAGTAGGAATGGTTTGTGGATTACGAACAGCTATAATGGCTGAACCTA
ATAAGATAGCAATTACAACCCAAGAAG