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Detailed information on CNT30213923


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021516Helianthus annuusCitrullus lanatus23.716.7494.35124reverse complement
CNT30569656Helianthus annuusActinidia chinensis23.3314.4995.9122reverse complement
CNT30543269Helianthus annuusBrassica napus23.714.1992.74124reverse complement
CNT30610163Helianthus annuusGossypium raimondii21.4121.0591.96112reverse complement
CNT30228329Helianthus annuusAnanas comosus23.960.3992.8125reverse complement

Expression of CNT30213923

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGDKLHRREGILERGKGSKNSEIIERGAV*

>peptide 2 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVKVSQ*

>peptide 3 (32 aa)
MVGLPLSFLLSGGPNRLMLKNQRMSYQRMSCG*

>peptide 4 (58 aa)
MVVNGGVTIILFAKWRSEPTDVEESADELSADELWLGVKCHSNPELAGSPRNALRRSS*

Sequence

>CNT30213923
CAAGTTCAAAATTCTGTCTCGGTAGGACATGTATCTCTATTACTATGAATTTCATAAATGAAGTAGTTAATGGTAGTTAATGGTGGGGTTACCATTATCC
TTTTTGCTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCC
AGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAGCGGTACCA
AATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCAAGGTCAGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAA
TTCTCGAACGCGGAAAAGGATCCAAGAACTCCGAAATAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAGAGTGGCAGTAAGG
GTGACTTATCTGTCAACTTTTCC