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Detailed information on CNT3021362


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 2e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Citrullus lanatusSetaria italica38.133.0780.65248forward
CNT30318541Citrullus lanatusCorylus avellana63.4488.0681.11413forward
CNT30500451Citrullus lanatusCoffea canephora36.7122.484.52239forward
CNT30727603Citrullus lanatusCorchorus capsularis62.988383.17410forward
CNT30504810Citrullus lanatusNicotiana attenuata62.9862.9880.73410forward
CNT30636701Citrullus lanatusCapsicum annuum59.9194.8982.82390forward
CNT30182233Citrullus lanatusSecale cereale27.6528.9481.67180forward
CNT30222279Citrullus lanatusHordeum vulgare24.7353.3183.23161forward
CNT30590847Citrullus lanatusMusa acuminata5375.4978.84345forward
CNT30510868Citrullus lanatusSolanum lycopersicum28.4288.9486.49185forward
CNT30244810Citrullus lanatusAvena sativa27.6522.2882.22180forward
CNT30457070Citrullus lanatusSaccharum spontaneum27.9626.7381.32182forward
CNT30134072Citrullus lanatusLolium perenne27.6524.7981.11180forward
CNT3066796Citrullus lanatusLeersia perrieri27.6546.2781.11180forward
CNT30341003Citrullus lanatusEragrostis tef23.8163.0184.52155forward
CNT30595456Citrullus lanatusOryza meridionalis27.9631.9381.32182forward
CNT30355562Citrullus lanatusLactuca sativa56.8463.4681.35370forward
CNT30424172Citrullus lanatusPapaver somniferum61.657.4581.8401forward
CNT3054595Citrullus lanatusAmborella trichopoda27.9687.9282.42182forward
CNT30105598Citrullus lanatusOryza longistaminata27.9626.4280.22182forward
CNT30325711Citrullus lanatusAsparagus officinalis22.4345.7783.56146forward
CNT30574680Citrullus lanatusOryza barthii27.9619.8779.12182forward
CNT30580197Citrullus lanatusEchinochloa crusgalli27.0421.3682.95176forward
CNT30497454Citrullus lanatusDigitaria exilis27.548.1282.12179forward
CNT30115589Citrullus lanatusOryza nivara27.9612.7579.12182forward
CNT30594668Citrullus lanatusEragrostis curvula22.8944.2184.56149forward
CNT30603529Citrullus lanatusOryza punctata26.5722.6179.77173forward
CNT30174824Citrullus lanatusVigna angularis41.0128.1180.9267forward
CNT30550386Citrullus lanatusOryza brachyantha19.6646.5582.03128forward
CNT30336663Citrullus lanatusCynara cardunculus56.0778.1682.47365forward
CNT30723923Citrullus lanatusLupinus angustifolius28.4290.2482.7185forward

Expression of CNT3021362

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MTSHKSSSTGDNNPQPPPPNTDGDSAPCFTKSIYLRTRNLLPARQTCRKRSTNCRTSFRGANTGQRGLKDEEGGTNQNADKNKQKPLLSEEIV

Sequence

>CNT3021362
TTACCTATAGGGTTTACATTTCCCCAATATGTTTCCTTCTGAGGATGCTCAAGTGGATCACCATAAACCTCACTCGTACTGGTGAGTAGAAATCTAGCCC
CAATTCTCTTTGCCAGGCCAAGCATATTCAAGGTACCCATTACATTTGATATAATAGTCTTGACAGGATTGTACTTGTAGTGAACAGGAGATGCTGGACA
AGCCAAGTGATAGATTTGATCCACCTCCAAAAGAATTGGCTCAACAACATCATGTCGAATGAGCTCGAATCGAGGATTTCCCAGATGATGCACTAAATTA
TCCTTTCTACCGGTGAAGAAGTTATCAATAACAATCACATCATCCCCTCTTTCAATTAGCTTATCCACAAGATGACTTCCCACAAATCCAGCTCCACCGG
TGACAACAATCCTCAACCTCCGCCGCCCAATACCGACGGGGACTCTGCCCCCTGTTTTACCAAATCCATATATCTCCGAACCCGAAACCTGCTCCCTGCC
CGTCAAACCTGTAGAAAACGATCTACGAATTGCAGAACCAGCTTCAGAGGGGCCAATACGGGACAACGAGGGCTGAAGGATGAAGAAGGTGGAACCAATC
AAAATGCCGACAAAAACAAACAGAAGCCTCTGCTCTCTGAAGAGATAGTTG